RNA id: TU65130


Basic Information

Item Value
RNA id TU65130
length 2622
RNA type TUCP
GC content 0.43
exon number 4
gene id rsrp1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30340399 ~ 30344538 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTCCGGTTAACAGCCAGTCAGCGACGGTGCAAGTCCCAGCTCCAGTTGAAGCTTTGTGTCGCcgaaaatctttatttttattttttttcctgaggaTATACATTGGTTCTTAAGGTTTGACAATGAGGACTGAAGATAAGGTTCAAGTCCAGCAGAGTGATCTTGGCGAGGGAATGCGGCTCATTTTCAACCAGGAATCCTCACTTACGCCCAGATCTTCACGCTTCCAGCAgtcgcagcagcagcagcagcagtgataGTTCTTACTCCAGCAGTGATAGAAGCAGATCCCCCTCAGTGTCGTATAGGTCACGGAGACGACAGCGCCACGGATCACGCTACTCTTCATCTTCAAGCACGAGCTCCAACTCTCGTTCTCGTTCACGTTCTCATCCGCGCTGCTGCCGAGCTTCAGATCGTTCCCGTTGCCACCATCGCCGTCGATCTCGCTCTTACAGCCCCTATCCCAGGCGCTCATCCCGTTACGGGCGACGAAGATACTCCCGCTCTATCAGCCGCTCTTCTTCCCGGGAACGTTATTACAGGAGGTCACGGAGGTCTCGCTCTCGATCCTCAAGCTACAGGAGAACAAGAGGTGCTTACACTGGCAGGTTCAGGTGCCGATTCTCCCCCTCACCCATGAGGAGTTACTACAGGCCCAAATCGAAATCTCCGGAACGCTCCGTGTGGCTGAGTCAGAAAGACAAAATGGATCTTCTGAACATTGCCAGAGAGAATGCAGCGAAGATTCTGGGAGTAGACGTGGTGAAGCTGCCTGCAAGTGTGAAGTGTATCGAGGAACAAGTGAAACAGACGTTAGAGTCCGACGCTGAGAAAAGGGTGAGAGCAGACCCAGTGCCACTGAAGAAACCACCACAGGTGAGTGTTAAACACGCGAACATACTCATCCTTATCGACCGGAATCAGTGACCCACTGCTATGTTTCCCTCTTCCATCTAAAATGGGAAACGAGTTTTTGCTCTTATAGATGAACAGATCTGGTTAAAAGCTGTTAAAACTGTATAGGCCTTTACTTTGCATGCACTTGAAAGGGGCTATTTAATCTTTGGCTTAGattttatcttagtgtcatatACTTCTGTCGTAAAGCAACCTGGGTCATCGTGTAAATTATCTcctcagacatgattgtttttggCCGATGGATGTAATGGAATCGTGatgaagacaaaaaatataGACCACCAACCCCTACATACTGTCTTGTCCGGATTAggtaaaaatacaaaacaagattgtgtgtgtgtgtgtgtgtgtttgggcgtgtgtctgtgtgtgtccctgtgcaAAAAAGAGCAAGTGACATGcaacacatttaataaatttattttattttttttaaaaataaatatcttgGTCAATGTCTGCCGGAGCGCTTCAATTGCATTGTGTCTGTATCATTTCTGTTCCTGTAGATCACATGACAGTGGTCTGCACTCCTCCACCCTTGGGAGTAGGAGAAAGAGGGGGAAATCATTTCACTTGAGAGACGCCATTTTTCAAGACGGTTTAAAATCTTGTAATGTGCAAAGGTCAAGTAACGTCAGTGCAAATATAGTTAGTCCTAGACTTTCCTCATGTACTATATTGACTGATGCAGCACttcatcatattcatattttacgAGGCGGGTAATCCTGTCTCAGAGCACATACCTCTATCAGTAGGACTTGAATGTAAACTTGCTGATGGTTGAACTGGGTACGTTGTTATTCACCAGAGTCTTCCTCAGTTTTGTGTGAAGAACCTCAGGCGTACGGACTGGCTATTAGAGGGGCTTAAATCAGAAGAACCCTCGTATACCAAAGACAAGTCTGCGCACAGAGCGCTGGATGgtggtttggaaaaaaaatttacatttactgcatCTTTATTTAGGATTCTGTGTCTTATTATTTTATGAGCTCTGCTTTTATACATGTTGTTTACTTTGTCTCTGACTGCAGCACAAGCGGTTGGCAGAGATGGGTAGAAACATAAGCACTACAATGTCAAAGTCACTCTAAGTAGACTcggtttccttgttatttcatgcaTGTAAAacgttttgttaaaaaaaaaaaagaatgattaactattttagtgtttaatataattgtctcttcttttcatttctttaggACGAAGGCGAGGAAGATGATGTTGTGATTTCTAGAACATCTCCAGGAAGAAAACCAATTACCTTCAGCATCGGTAACACTGTTGCCAAGCCATCGAGCAGCCCAACGGTTCACGTTACAGAGAGTAAGGTAACGTCCAGAGCAGACAGTGTGGGGAACAGGATGCCGTATGGACAGTGGATCCCTGTCAAGACAGTTTCCACTAAAAAGCGCTGATCCTCTAGCGTTGGAGTTTATTAGTGctgtatatattgtaaatagtCTGTACATATAGGAAGGAAATGTGAAATAGTGGATTCATCAggcatgttttctttcagaTATAAAGTGATTTAAGTTGGAAGAAGACAAGTGGATATCAAACAGGTGGGAGGTTTCGTATGtgaacttgtgttttttttgtgctttgtaaATAGTTTCTAATAAAGATTCTGAAGTGAAATGATATAAGAAAATTGTACAAACAAGACAATAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65128 lncRNA downstream 558 30339477 ~ 30339850 (-) True G55270
TU65051 lncRNA downstream 140251 30198325 ~ 30200157 (-) False runx3
TU65077 lncRNA downstream 177438 30162751 ~ 30162970 (-) True G55220
TU65018 lncRNA downstream 290708 30048430 ~ 30049700 (-) False cdh23
TU64883 lncRNA downstream 463648 29875406 ~ 29876760 (-) False LOC113542120
TU65226 lncRNA upstream 2632 30347170 ~ 30387537 (-) True G55349
TU65232 lncRNA upstream 11033 30355571 ~ 30414469 (-) True G55351
TU65230 lncRNA upstream 13416 30357954 ~ 30386396 (-) False G55351
XR_004577788.1 lncRNA upstream 52874 30397412 ~ 30401396 (-) True LOC113541972
TU65284 lncRNA upstream 128066 30472604 ~ 30477610 (-) True G55400
XM_026939142.2 mRNA downstream 86952 30200153 ~ 30253456 (-) True runx3
XM_026939415.2 mRNA downstream 165288 30163347 ~ 30175120 (-) True chp1
XM_034302618.1 mRNA downstream 179184 30155087 ~ 30161224 (-) False khdrbs1a
XM_026939471.2 mRNA downstream 191484 30140946 ~ 30148924 (-) True LOC113542130
XM_026939036.2 mRNA downstream 230888 29879295 ~ 30109520 (-) False cdh23
XM_034303167.1 mRNA upstream 583 30345121 ~ 30352294 (-) False eif2ak2
XM_034303168.1 mRNA upstream 583 30345121 ~ 30352293 (-) False eif2ak2
XM_034303166.1 mRNA upstream 583 30345121 ~ 30352293 (-) False eif2ak2
XM_026939516.2 mRNA upstream 583 30345121 ~ 30352293 (-) True eif2ak2
XM_026939517.2 mRNA upstream 583 30345121 ~ 30352283 (-) False eif2ak2
XR_004577811.1 other downstream 179185 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other downstream 179185 30153487 ~ 30161223 (-) False khdrbs1a
TU65057 other downstream 217586 30112034 ~ 30122822 (-) False G55209
TU65059 other downstream 217753 30111831 ~ 30122655 (-) True G55209
TU65060 other downstream 217753 30112322 ~ 30122655 (-) False G55209
trnag-gcc_2 other upstream 410868 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 507399 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 515898 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 1201822 31546360 ~ 31548633 (-) False LOC113541990
TU66090 other upstream 1219017 31563555 ~ 31600685 (-) True G56150

Expression Profile