RNA id: TU65232


Basic Information

Item Value
RNA id TU65232
length 2329
lncRNA type sense_over
GC content 0.37
exon number 3
gene id G55351
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30355571 ~ 30414469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttaaaaaaaaaaaaaaaaaccactaaaacagtgttctgtatatttgtgacatatagaaacaaaaatgttaagCTAATGCTTTTAGAAAGGAAACATAGGGTTAGTGCTATGAATCAGAGTTCATAGTTCTACAAAAGAAATTCATTTCATACACATGTCCACATTCTATATAAGTGGACgttatggtcagtgttataaacAAGCTATCACAGGTTTACAGAAAAATGCCTTTAAACGAAAACTTGGTCAGCGCCATATATGAGAGTAGAGCTTAATTGTATGCTCTTAAATAACTCCAAGCAGTTGCAGAGCAACAGACAGGGACAGGATGATCACTCCTAAGAGGCCGATATAGCCGTACGCCCCGTTCATCCTCTTGGCCGGGtctaaaaggaaagaaaagagaacacAGAACAGTGAGCATGACATGAGGTGCCTTCATACTTCCTGGTTGGTCACTCATTCATAGATCATAAGAAATGTCTGGAAGTTCTTACAAATTCTGGATCattactgaattattttttcatCTGTATACACATTGCTACCTCATAGCTACAGTGTCCCCGGTTCGAACCTGAGCCGGGGTGACTGTCAGACTTTctatgcatgttctccccatgtcttcgtgggtttcctcagggatCTCCGGTTTCCTaacacctcccaaaaaacatgtcGGATTGGCTATACTAAATTACCCTTCAGTGTGAATGGGTGCGTtcaatccagggtgtattcccacctcacacctagtattcctgggatagtctCTAGATCCAGCATGACCCTGACCACCGGTTATTGAAGCTTAATGAATATATGTTTGCAATTGATCAAATCAGACCCTCTCTCAGTGATTGAGAGCTTTGGCTACATGGACAGACAGCATAGTTGCAAAGTAGCATGTGaaaccattaaaaaatatatgtaatacaGTGAATTCATCCCAGTATATAATCATATTCCTAACTGCACTGagtaacaaaacaaataaaaccagagGACTTACTGCCGGTGTAGTAACCCCAGGCGTAAGATAACCTGCTGGTCACCCAGATAACTCCCAGAACAGAGGCCGCCCACGGGATATACTAGTGCAGCAATGGTCTGGAAAACCAGCCACTGTGGATAAACCTCCAGTGTGTTCTGATGAGCTCTCTGGATGCAGTTAAATATTTCGTCCTTAGTGCTGTACATAGTGGGGtactgaaaacacaaacaagacaaTGTACGTTTGACTCAAGCATCAAAACACTTCACTCAAAATCAAGTAAAAGgcacaaaattaaatcaagTAAACCCTAGAAACTTACAATTTTACTTACAACGCATAAATACAAGATATATACAAGATAACATTGGTCAAATGATTGCATTCTTTCATGGAGAGCATGCGCCATAATTGGgaatcatctgcacttgtgaagtgaccAATAACACATCACTCCAGATCACAATGACAGATatgaattatataatttatatggtTATACAAGCattttataaccattaaaaagagctcttcagtagttTTCAAATAACATGTAAGTTGAGAAATCAAACACGGAAGttgggcattttagccgactttggagctctattttcCCTGGGTCagacactttatttattcaatcaaatttttgggagaaataaattgatttgtttatttttgagaTATGGTGatcctgtagtacattttgtttacaatattaaaccactgttcatagcaattttttaataatttagttttatacagaccagatgcttttttacattatttatgatTCAGACATAAAAAGGGAGTCTTCTCATtcacaatttttcttcattaaaattttgttcaaaatattctgagaatcgaaCTGAATCAAATCCTGAAGCCAGGGGGGTCTGGTCAGATGACTGTATCCCTATCATTAACCGTGAGACATTCccactttttccattttcaatattAGATCAAATATTAGAGTATTGACCAATTCCAGCTACTTACATCCTCTTGGTCCCTGAGCATACCCATACTCATACTACACACTTACATAAAACATCAGAGACATAACGGCAGCATGCTATAAGACAAGTTGTGTCCTATGTTGACCGCAGGAATGAGTTCTGATTTACACAAACCTGACATCACATCACTATGGCGATGTAGTTTCTATTTAAGTAGAAAACTTGTTTTTACTTGTTATGTAGTGTTTATGTtgtgaaaacatgttttaacagctttgtaaattttataagagtttttttaataaattatttttaagagCAAAGATGCACAAAAGAGTTGACTCCCCATTATACCTCTCCTCTGTTCGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65129 lncRNA downstream 11033 30340408 ~ 30344538 (-) False rsrp1
TU65128 lncRNA downstream 15721 30339477 ~ 30339850 (-) True G55270
TU65051 lncRNA downstream 155414 30198325 ~ 30200157 (-) False runx3
TU65077 lncRNA downstream 192601 30162751 ~ 30162970 (-) True G55220
TU65018 lncRNA downstream 305871 30048430 ~ 30049700 (-) False cdh23
TU65284 lncRNA upstream 58135 30472604 ~ 30477610 (-) True G55400
TU65286 lncRNA upstream 60267 30474736 ~ 30475855 (-) False G55400
XR_004577792.1 lncRNA upstream 89867 30504336 ~ 30618177 (-) False LOC113542125
XR_003404263.2 lncRNA upstream 156876 30571345 ~ 30618184 (-) False LOC113542125
XR_003404264.2 lncRNA upstream 156876 30571345 ~ 30618177 (-) False LOC113542125
XM_034303167.1 mRNA downstream 3277 30345121 ~ 30352294 (-) False eif2ak2
XM_034303168.1 mRNA downstream 3278 30345121 ~ 30352293 (-) False eif2ak2
XM_034303166.1 mRNA downstream 3278 30345121 ~ 30352293 (-) False eif2ak2
XM_026939516.2 mRNA downstream 3278 30345121 ~ 30352293 (-) True eif2ak2
XM_026939517.2 mRNA downstream 3288 30345121 ~ 30352283 (-) False eif2ak2
XM_026939476.2 mRNA upstream 32789 30447258 ~ 30458120 (-) False LOC113542134
XM_026939477.2 mRNA upstream 32789 30447258 ~ 30451390 (-) True LOC113542134
XM_026939520.2 mRNA upstream 208780 30623249 ~ 30642158 (-) True LOC113542166
XM_026939200.2 mRNA upstream 290545 30705014 ~ 30719700 (-) True fam204a
XM_026939161.2 mRNA upstream 331763 30746232 ~ 30753678 (-) True LOC113541964
TU65130 other downstream 11033 30340408 ~ 30344538 (-) True rsrp1
XR_004577811.1 other downstream 194348 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other downstream 194348 30153487 ~ 30161223 (-) False khdrbs1a
TU65057 other downstream 232749 30112034 ~ 30122822 (-) False G55209
trnag-gcc_2 other upstream 340937 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 437468 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 445967 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 1131891 31546360 ~ 31548633 (-) False LOC113541990
TU66090 other upstream 1149086 31563555 ~ 31600685 (-) True G56150

Expression Profile