Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU65286 |
| length | 821 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | G55400 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 30472604 ~ 30477610 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU65232 | lncRNA | downstream | 60267 | 30355571 ~ 30414469 (-) | True | G55351 |
| XR_004577788.1 | lncRNA | downstream | 73340 | 30397412 ~ 30401396 (-) | True | LOC113541972 |
| TU65226 | lncRNA | downstream | 87199 | 30347170 ~ 30387537 (-) | True | G55349 |
| TU65230 | lncRNA | downstream | 88340 | 30357954 ~ 30386396 (-) | False | G55351 |
| TU65129 | lncRNA | downstream | 130198 | 30340408 ~ 30344538 (-) | False | rsrp1 |
| XR_004577792.1 | lncRNA | upstream | 28481 | 30504336 ~ 30618177 (-) | False | LOC113542125 |
| XR_003404263.2 | lncRNA | upstream | 95490 | 30571345 ~ 30618184 (-) | False | LOC113542125 |
| XR_003404264.2 | lncRNA | upstream | 95490 | 30571345 ~ 30618177 (-) | False | LOC113542125 |
| XR_004577790.1 | lncRNA | upstream | 117302 | 30593157 ~ 30618187 (-) | True | LOC113542125 |
| XR_004577791.1 | lncRNA | upstream | 117302 | 30593157 ~ 30618185 (-) | False | LOC113542125 |
| XM_026939476.2 | mRNA | downstream | 16616 | 30447258 ~ 30458120 (-) | False | LOC113542134 |
| XM_026939477.2 | mRNA | downstream | 23346 | 30447258 ~ 30451390 (-) | True | LOC113542134 |
| XM_026939174.2 | mRNA | downstream | 97687 | 30368672 ~ 30377049 (-) | True | rhd |
| XM_034303166.1 | mRNA | downstream | 122443 | 30345121 ~ 30352293 (-) | False | eif2ak2 |
| XM_026939520.2 | mRNA | upstream | 147394 | 30623249 ~ 30642158 (-) | True | LOC113542166 |
| XM_026939200.2 | mRNA | upstream | 229159 | 30705014 ~ 30719700 (-) | True | fam204a |
| XM_026939161.2 | mRNA | upstream | 270377 | 30746232 ~ 30753678 (-) | True | LOC113541964 |
| XM_026939519.2 | mRNA | upstream | 445050 | 30920905 ~ 31006462 (-) | False | gfra1a |
| XM_026939518.2 | mRNA | upstream | 445050 | 30920905 ~ 31006462 (-) | True | gfra1a |
| TU65130 | other | downstream | 130198 | 30340408 ~ 30344538 (-) | True | rsrp1 |
| XR_004577811.1 | other | downstream | 313513 | 30152908 ~ 30161223 (-) | True | khdrbs1a |
| XR_004577810.1 | other | downstream | 313513 | 30153487 ~ 30161223 (-) | False | khdrbs1a |
| TU65057 | other | downstream | 351914 | 30112034 ~ 30122822 (-) | False | G55209 |
| trnag-gcc_2 | other | upstream | 279551 | 30755406 ~ 30755476 (-) | True | trnag-gcc_2 |
| trnag-gcc_3 | other | upstream | 376082 | 30851937 ~ 30852007 (-) | True | trnag-gcc_3 |
| trnag-gcc_4 | other | upstream | 384581 | 30860436 ~ 30860506 (-) | True | trnag-gcc_4 |
| XR_004577789.1 | other | upstream | 1070505 | 31546360 ~ 31548633 (-) | False | LOC113541990 |
| TU66090 | other | upstream | 1087700 | 31563555 ~ 31600685 (-) | True | G56150 |
