RNA id: TU65343


Basic Information

Item Value
RNA id TU65343
length 4029
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G55449
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 30619177 ~ 30623205 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatattttaagtcaaattcAGTTTTTacatacaaatgcaaataatggAATACATTGTATTTCAAAACTTGATATACAACTTCAAAATATAGCATAACATTTTTCCAagttacaaaattaaaattcaaatcctAGTGACAAAAATTCTAGCTGTGACTTCGATGGATTAAACAATGTTGAATTGTCCAAAATTGTTTATGCTGGCATATCTGGGATGACGTGCGCATTTTCCAAAGATCTTTTAAAAGACGTATGCACGTTTCCCAGTTAAACCTCGGCCTGTTGAGTCTGACTCAGACTGATGTGCCAGATTTATGAGAGTGAACATGAAGTAGTAACACGAAACCATCTTTTAACCCGTATGTTCACCCCATCAGACAGCGTGTATGACCCACTGTCATTGCTTGTGTAGGTGATTTATTAAactaaaaatgtctttaaagtATTCACAAagtattcaaaattcaaaagttacttttcaaaattaaaaaaaatttactttatgcccatttttgattattattaatataatatatgcacTTTTAATTAGGTACTTAAATACAATTAGATAATGATTTTGTAATTTGCCACTAAAACATGTAGATGATTGTTTGAGGCAAATTCACTTCATTagcttatttgtttattttttattacagtatatagatTGTTATAGATGGTTGGCATTTATGTTTGaggggattttttttacacactgttttatGGGCTAATGTGAAATATGTGTTTTATGGTTGAAAACGTTGGATAGTGTTATATCAAAACATCATATGACTAGATCATAAAGTTATAACTTACGAACTAGCACCAAGCAGAACGCTGCTGAGGTTTAAACCACTATTTTAAACCACTATACAAGTCGTACCGCTAGCTGGCCGCTGTGACGGTAGTGGATCCAAGACAAACTTGTAGTCGACTAAATATCCAACACTTAAGTAATTTTTGCTCTTTTAGTTTCATTAAAACCAATTTTTTGAAGTAAATGGTGATGGTAGCACACCCTTAGATTATCATCGGTTGCTTGtaataacattataatttatttaaacacaacatATTTACAGATGTGGATGCTATTTCTTCTGCAGctgtatattttgtgtaatcATGATTTTGGgaatatatttttcctttagTTGTGGTATTTTTGAATCAAAAGAGTTGTACacaaagctgcaaaaaaaagtaaataaagtctCACTTAAATAGAATGGAATaggtaattaatatttataataaaatgaatacagCACATCTTGAATGGACAAACaagtattaaacaaaaatggagCAGTGAACTTTAATCtttgattcatttctttaatttaaaagaacTTTAATCTCCAGTTTGAGGAAACGCCACTGGCTTTTCACTCACTTTCCCAACTTTAATATGTTATATGAAAGCTGGGAATCTATGAATTTAATTCCATCCTATGATGGACCCCTAAATCAAatctggaaaatgaaaaaaatggtaaaaatttGAACATCATAGATGATGGCGTGCTAGACAGCACAGGgtagtgtatataaaattatactgaGGCAGCCATAAGTATTGCATCTACTCATTTTTTCACTGGCTTAGAAAGATTTACGTATGGTTTACGAAATGTTTTGCACACTTCATTAGTGCCACctgcagtgttacagtgttacattttcctctttttattaaatgtaaattgatGTCAATTTGACAAATTTGTGAATATTTGCAAACATCAAGCAAACCAAAATCTTTCACTAaggaaaatgcattttttttctctgatgtgTTCACAATTTGAGTTTTATTCTAAAGAAAATGTTCACACGAATTGAATTTACACTGTAAACGAATGTTTCAGCTGCTGTCTTGTGTTTGACGTTAAGAATCGTCTTCCACGTGTCTGTAAAACAGCTGTACAGCTGTTGGTCggttgtgtgtaaatttatacagTACTTCCATGTACAGTAAATTCTTTTTGTTTccgttgttttgtttttttttcttattcactATGCATCTTGGTACGGAGCTGCTGTTTTATACTCTGAATGTATTTCGATCAATCAGCAAAGTCTGTATTCACAAATATGTAATTGTTTTTACTTAAATATtggtttattttgaataatgCTGATTATAAACTGTATTGTTCGATCAATTCACAGCATGTTAAAGAGGAATGTTAGTCTTAATTCTGTCCACTCAGCTATATCTATACCACGATATCATTAAAATGCCATGTGTCATATACACAACGGAAAAAATGTCCCATTCGTATTGCTAGAGCCAAAacaagtttttctttctttctttctttctttctttcatgtgtTCATCACTTTTATTATTAGATGTGTACATATAGTGTCGTAAAAAGAGTCGTTCCATGTGATGTCACATCCATAACTGTgctacataaggaataaaacaaagcaCAGCGTggtgttgtaggaaaataatcaactacagcatgccacaaaatgttttattccatttacattacaccacagcaatttttaatttattgctgaacatgtcatgctttttatcgatttatacttacattttatgttataaaacatccatgaaacaagattgatcctgttatcacttattcACAAgtgatttattgtgttttcaaaacatttatGTGGAATGTCCGCTATACAAATCCCTGCGTATGTTATTGCCATAGAAATgacaacatattagaaagagtgcattactATGAAcctgtataaaaaataataattaataaaataaaagattcaacaccttctgaccaatcagaatcaagaattcgaCAGTGCTGTGGCATGAATATTTCTAATATGTACATGAATTTTGGAAATTGATTTGTGTTCTCCCTGAGAGGTCATGTGACCCAAAATGTTGGCTCAATAATGCTAAACTTGTGCACACTGCGAGTCACAAATTTCTCTGTACTAAAATTTgttgatgattattttaatacttaagAAGAATTGTGTGATAAAGTGTGAAAATTTAGGCTGAAAATTTCGTTCCTAAAGCAAGAAACTTGCAACAGACTTTCGACTGTTCCAATAAACTAGTAACTGATGCAAGGATGAAACATAATTAAAACTCTATTCCACAACTTAGCAGTTTATACACTCacttaaaaaatctttttttaaattattttgaaaattcCTGTTTACTATTTCCATCCTCTAAAACCACCATGcctttttaattcatatttttctttcatttaacttgtgtgtttttctgacaTCAACTtacagatgatttttttaatgatggttATTATGATAAATATTGCTATTGGTACTATTGCTACTATGAAGGGCTGTTACAAGAAAAGTCTccaaaaagtgttcattttcgTCATATTTGTATAGTATTTCCCACCCTTCCAGGTGTTATTCAAATCCTACTCGCCAtgcataaatatgaatattcacTTTGTGCATGCAAAAATCACAATGCACCGAGTTTAACCTGCATTAATGAGCAACAATTTTcattgcatttctttttttcaatcaaTTTCCTTTTCTCTTAAGATGCAAAAAACCTCCGATACTGTGATTGAACTTCACTGTTATCACTTTAATCACATTCAGTGTGTACCTTCTTGTAAATTAGACCATAATCATGTTAGCTGATTCAGTCCTGATTCAGTGAGTCATTTAGAAAGGTACGTTTATTTCCTGAAtcatgaagttttttttttttttacattttcaaacactTGAAATCTAATATAATCCAATAAATCTGTACAGTATGTGACACTATTAGAGTGATATAGAATCTCccctgatttttcttttcttttttttttttaataaatggaagtatcacacatttatttatgactTACCCCATCTTACATTCCTCCCCATATTCTAGGCATGTGGCATGAacgaaaaaaaagaagagtgtTAGTGTTAGGAAGGAGTGATTaattgtaatgcatttttttggACCACTGTATAGGAAGCACATGATTGTACTATCCTTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577790.1 lncRNA downstream 990 30593157 ~ 30618187 (-) True LOC113542125
XR_004577791.1 lncRNA downstream 992 30593157 ~ 30618185 (-) False LOC113542125
XR_003404263.2 lncRNA downstream 993 30571345 ~ 30618184 (-) False LOC113542125
XR_004577792.1 lncRNA downstream 1000 30504336 ~ 30618177 (-) False LOC113542125
XR_003404264.2 lncRNA downstream 1000 30571345 ~ 30618177 (-) False LOC113542125
TU65916 lncRNA upstream 699949 31323154 ~ 31323464 (-) True G55992
TU66118 lncRNA upstream 1009890 31633095 ~ 31633326 (-) True G56173
XR_004577870.1 lncRNA upstream 1033846 31657051 ~ 31675951 (-) False LOC117596876
XR_004577871.1 lncRNA upstream 1033846 31657051 ~ 31675951 (-) True LOC117596876
TU66258 lncRNA upstream 1064058 31687263 ~ 31687472 (-) False fndc5a
XM_026939476.2 mRNA downstream 161057 30447258 ~ 30458120 (-) False LOC113542134
XM_026939477.2 mRNA downstream 167787 30447258 ~ 30451390 (-) True LOC113542134
XM_026939174.2 mRNA downstream 242128 30368672 ~ 30377049 (-) True rhd
XM_034303166.1 mRNA downstream 266884 30345121 ~ 30352293 (-) False eif2ak2
XM_026939520.2 mRNA upstream 44 30623249 ~ 30642158 (-) True LOC113542166
XM_026939200.2 mRNA upstream 81809 30705014 ~ 30719700 (-) True fam204a
XM_026939161.2 mRNA upstream 123027 30746232 ~ 30753678 (-) True LOC113541964
XM_026939519.2 mRNA upstream 297700 30920905 ~ 31006462 (-) False gfra1a
XM_026939518.2 mRNA upstream 297700 30920905 ~ 31006462 (-) True gfra1a
TU65130 other downstream 274639 30340408 ~ 30344538 (-) True rsrp1
XR_004577811.1 other downstream 457954 30152908 ~ 30161223 (-) True khdrbs1a
XR_004577810.1 other downstream 457954 30153487 ~ 30161223 (-) False khdrbs1a
TU65057 other downstream 496355 30112034 ~ 30122822 (-) False G55209
trnag-gcc_2 other upstream 132201 30755406 ~ 30755476 (-) True trnag-gcc_2
trnag-gcc_3 other upstream 228732 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_4 other upstream 237231 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577789.1 other upstream 923155 31546360 ~ 31548633 (-) False LOC113541990
TU66090 other upstream 940350 31563555 ~ 31600685 (-) True G56150

Expression Profile