RNA id: TU66090


Basic Information

Item Value
RNA id TU66090
length 3597
RNA type TUCP
GC content 0.41
exon number 3
gene id G56150
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31563555 ~ 31600685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGCTGAAAAGGTAGATATTTATTGCAGCATTGGTCTTAACAGCATGAAGAAAATGACAGTGACTGAAAATTATAGTGTACCTGAGGATAGCGTGAGACTCACAAGCAAAAACATGAcatataaatgaagaaaaaacaaaaagagaacaaaTGTGTGTATTAGGACCTGACCGATATTATATCCTATAATGCACCTATAATGTTCTATAGGCAAACTACATTCATAAACATGATGCGATTCTGAATGACCACTAACAGCAGGTAGACTGAACGCTACAGCATTCAGAAGAGCGACTGTtctcacgtgtgtgtgagagaaggtgTAGTTATAATCTactggatggctgtggcatcgttaGGACCCACACTTTAAATCTCTTGTTGATGGAAAGTTCTTTGAGAATATAGTAAGATTAGTGTATAGTAAGCATTCATGCTACTGGAAGCCTGTGGTTTTATGCTCCTGATCTCTGAGTTCTCGAAATTCTTTTCCACTCATAACCTGAATATGAATAAAGCTGCATTTGTATGTCTAGGGACTAATTTtaagctatatatagctacatTCTGAGCAAATctgcataatatgcaaatctTACTCTTTGAAACTCACCCAACCAAATCATTagaaatttacataaaaatgtctCTATTATTTGCAAATCAAGGAgcaagtgcttggaccccgatgATCGCTGTTTGCagctatattttctatatttatgttGCTGTTCATCCCCGTTTAAAGCAAACCTATTGGTGTATGGATAGTACTGGCATTTTCAGCTCCGTAAAGTGTGTATCAGTCGGGCCCTAGTGTGTATCAAAGCAGGCAATGAGAAATAATATCTGGTGATGTGTACGAATATAACATTCTTCATCACAGTGGCTGGATTTTGCTCTAAATGTGCTGCACTGGGAAAACATGTAAACTTTATCACTCCACCTTAATCATTAAGAATTACACTCTTTGTTTTCCTGGATGAGGATAACATAAGATCAGCATTGAgttactgtcacacacacacacacacacacacacacacacacaacaaaacagcTGTTTGAATGGATTGTCACGTACACTGAGAAAAATCAGGGTTTACATTAGTTTGTTGATGGATAGCAGGGAAATCtagatgggtgtgtgtgtgcgcgtgtgtgttttaccCTGTAAAACCGTCCTATAAACCTCTCCGGTTCGTCGGacaaagaggagaggagaggagaaaacaGATGGGAACGGACTATCAGAAaccttcctcacacacactacaccatgACCAGGCATCGCATTATATGTGACTCACATTAGCCCCGCTCCAAACACGCCACGATACATCACGGTTCAATACCAAATAACGTTCATATCATTAGTTCGTACTAGGGAGCTGAGCCGGTTTTCTAGGGCACTAAATATCCTTATACACCAATAACTAGATCACTTATACAGGGAACTTGCACCCTACGTAACATATAGTTCACTATGCAGTAGCCTTTCTTCCTTAATGATGTAGGACTACGAAATGGCTCAATCCTAAATGGCTTCATATGCACTAAGTAGGGTGTACAATCCACTGTTTATATATTTGCTGGAGGGAGAACAAAAATATGAAAGTTCCCCTATTAGGTATTTTGTGCACTGCAAATGCTTGGCTTACTCCCATATTAACCCTTTAGTAAGGgcactatgtagggtgtagggtatagggtgtagatGTGATAAAGAATGAAATAGTATAGTAAGCAATATTCTATAGCCTATGTAGTACACTTAGATTAGTTCTAGATACACAGAGTGTAAATGCTATTACTTTAAACCCTATGTAGTGGACTCCTGATTGGTTAATGTCCAATATAAGGAGTAAAGAGCACGAATTCATTCCTGAAGTTCTCTACTGGACATTttagtgcactacttagggtcTAAGAGCCAATGTGCCATACATTCTTAATGCACTGATAAGGACTAAGGTGCTGAATCCCAATTCCTTATTGGACATACAGGGTGCGAAAGCTTACTTCAAAACCCTACGTcgtgcatacacacaaaatggGGGAGGCATTTGGGACGGAGCCTTTTTTCCCTGAATTATAGACGTTTAGAAAATTACAAACCAGTCCACACTGCAGCAACATGCAAATACAAGGCTGTGTGTTAGGCCAAATATTTCCAAAGCATAATAGTAAAAACTGgactttatatttgtaaatttgtaaagcTGTCTTGTGTGCTGTTAGTCACAGAAAACTTCTGAACTCATATCTGAGGAAATGCTTGAGAACGAACTCATCAATCTCAATCTGTTTCTTCTCCAAAATCCAGCTTTTGGTTTTCCTCATGCGAAAAGTATTTAAAGCCGTGCACCTTCCACTGTTTAATCTCGACGTTTGGGACGCAGCCAGAGATGAGCATCATTACATTCGCTTTCAGTTCTTTTCTGAACGgtttttaaaacatatacatacatctGACGACTATAAGTGCCTTTTTCCCCCCTTGATTTGGCTGGCTACATCAGGAGACACAGGTGAGTATCAGCGCCAGCTATGTGCTATGAGTCCATAAttataaaactaataaataaaagagaaaaataagaaatcaTTACTAAAATTATGtttcaaacaggaaaaaaaatgcaagaacCACAACCTTTAACAAGAGGCaaaatatagataaatatatgaacacataaaattaaatattgatacATGAGAAAATGTGGGTGGAACTCAACTGGATAAAAATgtgcacttacacacacacacacacacacacacacacacacacacacacacacacacagttcctcatACACAgtgaaaattgtaaaatgaCACATTTCCAGCACTGAAGATTAAGTTCATCCTGTTTCAGGCAGCTAAGAGTCAAGCACGCTCCTCCTTTACCCCTTCCTCCCTTCCTAGCTGTGCAGTACACACTTGGGTCCAGAAGGGGCTCCACTTCCTGctcagtcagagagagagagagagagagagggagagaccaGACAGACctctcagtctttctttcttcctggcCCATCACTTGTTCTTTTCAGGCGTTGATGACACGCCAGCTCAATCAGCTCGACCCCGCCCATCACCTTTTGCTGAACCAGGAAGAAGATCAGCACCACCAGGAAGTAGACGCGCAACGGCGTCCAGAGCCAGAGGCCGAGAAAGGAAAAGGCGATGAAGGCGTTCCAGTAGCACAGCGACGCGGCTTTGATCAGCGCCACCCTCAGCTCGCTCTTGCAGGGCGGTATGCGGGCTTCGGCTTCGTCGAAGCGCTGAGAGCTagaaaacgagAAAGCAGGTCCCGGAGGAGTGCAGCTGGGAAGAGAAGACCCGTGTTTTATTTCCCtccagcacagaatgaaaaaGTGCCCTCTGAAAGGCAGTCTGGGTAATATGCTAATTTAGGGCTGCATTACTTACTGCATTACTGGAGCCTTAACATCACAAAATAGTTCATATGCTTGGTGTAcagataaagagataaagaccacacacacgcagattTTCCAAATAGATGACCGCATACCAGGTGTGTCTAAAGGTGACATTATTAACCTCCAAAATCGATacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65916 lncRNA downstream 240091 31323154 ~ 31323464 (-) True G55992
TU65343 lncRNA downstream 940350 30619177 ~ 30623205 (-) True G55449
XR_004577790.1 lncRNA downstream 945368 30593157 ~ 30618187 (-) True LOC113542125
XR_004577791.1 lncRNA downstream 945370 30593157 ~ 30618185 (-) False LOC113542125
XR_003404264.2 lncRNA downstream 945378 30571345 ~ 30618177 (-) False LOC113542125
TU66118 lncRNA upstream 32410 31633095 ~ 31633326 (-) True G56173
XR_004577870.1 lncRNA upstream 56366 31657051 ~ 31675951 (-) False LOC117596876
XR_004577871.1 lncRNA upstream 56366 31657051 ~ 31675951 (-) True LOC117596876
TU66258 lncRNA upstream 86578 31687263 ~ 31687472 (-) False fndc5a
TU66264 lncRNA upstream 128088 31728773 ~ 31730112 (-) True G56279
XM_026939213.2 mRNA downstream 14922 31545901 ~ 31548633 (-) True LOC113541990
XM_034303155.1 mRNA downstream 38655 31519040 ~ 31524900 (-) True LOC113541870
XM_026939480.2 mRNA downstream 537710 31022661 ~ 31025845 (-) True si:ch1073-126c3.2
XM_026939519.2 mRNA downstream 557093 30920905 ~ 31006462 (-) False gfra1a
XM_026939518.2 mRNA downstream 557093 30920905 ~ 31006462 (-) True gfra1a
XM_026939215.2 mRNA upstream 12917 31613602 ~ 31620331 (-) True slc30a10
XM_034302651.1 mRNA upstream 77698 31678383 ~ 31830932 (-) False fndc5a
XM_034302648.1 mRNA upstream 77698 31678383 ~ 31830928 (-) False fndc5a
XM_034302647.1 mRNA upstream 77698 31678383 ~ 31830928 (-) False fndc5a
XM_034302646.1 mRNA upstream 77698 31678383 ~ 31830928 (-) False fndc5a
XR_004577789.1 other downstream 14922 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 703049 30860436 ~ 30860506 (-) True trnag-gcc_4
trnag-gcc_3 other downstream 711548 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_2 other downstream 808079 30755406 ~ 30755476 (-) True trnag-gcc_2
TU65130 other downstream 1219017 30340408 ~ 30344538 (-) True rsrp1
TU66257 other upstream 227129 31827814 ~ 31829484 (-) True G56272
TU66291 other upstream 236497 31837182 ~ 31838235 (-) True G56303
XR_004577843.1 other upstream 638916 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 750116 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 773651 32374336 ~ 32389144 (-) False ndufaf1

Expression Profile