Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU66180 |
| length | 981 |
| RNA type | TUCP |
| GC content | 0.46 |
| exon number | 3 |
| gene id | G56222 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 31783340 ~ 31796326 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04510 | Focal adhesion |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU66162 | lncRNA | upstream | 98316 | 31687252 ~ 31687469 (+) | True | G56205 |
| TU66157 | lncRNA | upstream | 106792 | 31677273 ~ 31678993 (+) | True | G56202 |
| TU66156 | lncRNA | upstream | 107717 | 31677166 ~ 31678068 (+) | False | G56202 |
| TU66128 | lncRNA | upstream | 110337 | 31674878 ~ 31675448 (+) | True | G56183 |
| TU66055 | lncRNA | upstream | 154330 | 31603019 ~ 31631455 (+) | True | LOC117596877 |
| TU66216 | lncRNA | downstream | 61180 | 31857506 ~ 31933623 (+) | False | ppp2r5eb |
| TU66217 | lncRNA | downstream | 61180 | 31857506 ~ 31933623 (+) | False | ppp2r5eb |
| TU66219 | lncRNA | downstream | 80134 | 31876460 ~ 31881458 (+) | True | LOC113542154 |
| XR_003404266.2 | lncRNA | downstream | 80161 | 31876487 ~ 31880686 (+) | False | LOC113542154 |
| TU66229 | lncRNA | downstream | 87519 | 31883845 ~ 31884780 (+) | True | G56245 |
| XM_026939271.2 | mRNA | upstream | 54163 | 31723644 ~ 31731622 (+) | True | bsdc1 |
| XM_026939269.2 | mRNA | upstream | 54163 | 31724319 ~ 31731622 (+) | False | bsdc1 |
| XM_026939501.2 | mRNA | upstream | 68078 | 31716451 ~ 31717707 (+) | True | olig4 |
| XM_026939214.2 | mRNA | upstream | 111954 | 31643762 ~ 31673831 (+) | True | LOC113541991 |
| XM_026939216.2 | mRNA | upstream | 185098 | 31577447 ~ 31600687 (+) | True | lclat1 |
| XM_026939272.2 | mRNA | downstream | 27091 | 31823417 ~ 31827120 (+) | True | marcksl1a |
| XM_026939420.2 | mRNA | downstream | 35256 | 31831582 ~ 31835791 (+) | True | LOC113542103 |
| XM_026939421.2 | mRNA | downstream | 40712 | 31837038 ~ 31837939 (+) | True | LOC113542104 |
| XM_026939185.2 | mRNA | downstream | 42953 | 31839279 ~ 31846529 (+) | True | snapc1b |
| XM_026939186.2 | mRNA | downstream | 42956 | 31839282 ~ 31846529 (+) | False | snapc1b |
| TU65162 | other | upstream | 1299498 | 30479932 ~ 30486287 (+) | False | LOC113542119 |
| TU65142 | other | upstream | 1427331 | 30354322 ~ 30358454 (+) | False | mgst3b |
| TU64923 | other | upstream | 1844604 | 29937548 ~ 29941181 (+) | True | G55091 |
| XR_004577899.1 | other | upstream | 2038438 | 29712258 ~ 29747347 (+) | False | ablim1a |
| trnav-aac | other | upstream | 2677871 | 29107842 ~ 29107914 (+) | True | trnav-aac |
| XR_004577804.1 | other | downstream | 149876 | 31946202 ~ 31989051 (+) | False | kcnh5b |
| TU66551 | other | downstream | 688650 | 32484976 ~ 32487366 (+) | False | zfyve26 |
| TU66962 | other | downstream | 1071506 | 32867832 ~ 32868341 (+) | True | G56863 |
| TU67222 | other | downstream | 1930543 | 33726869 ~ 33728808 (+) | False | G57080 |
