RNA id: XM_026939453.2


Basic Information

Item Value
RNA id XM_026939453.2
length 1204
RNA type mRNA
GC content 0.51
exon number 5
gene id fndc5a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31678383 ~ 31830932 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCGAGCGCGCGGTCTAAAGGATGGCGCCGTGTTTGGCGCGCGCGGTGCTGCGCGTGCTGAGCTGTTTCAGCGTGTCGCGGGTTTTGGCTGAAAAAGGACGTGCACATGCTGCGCTTCATACAGGAAGTGAACACCACCACACGGAgctgtgcattgtgggatttggAGGCGGAGACGGACTACATCGTGCACGTGCAGTCCATCAGTGTGCAGGGGACGAGTCCGCCGAGTGAAACTCTGCGTTTCAGGACGCCAAAGGAAGCCGAGAGACAGGCGTctaaaaACGAAGTCACCATGGAGGAAGTGGGGCAAGCCAGTCAGCTCAGGGCGGGGGAGCTCATCATCATCGTGGTGGTGCTAGTAATGTGGGCAGGTGTGATTGCCCTCTTCTGCCGTCAGTACGACATAATCAAAGACAACGAGCCTAACAATAACAAAGACAAAGCCAAGAATTCGTCGGAATGCAGTACCCCTGAGCATCCGACAGGGGGGCTGTTACGGAGCAAGGTGTAAccccaccacctccacctccacccagAGCTCAGAAGATGACGAGCAGTTCCTCaaccacagcaacaacagcaacaaccaGATGCCATCTGTGACCGTTATCAAGGTGTGACAGGACACATTTCGtcaaaaaaggacaaaagatTAGAGTGTAATGACAGCACACGCTGCTCCAGCTGAGGCTCGGATGAGCCGGGTATCACGGCACCTGGCTCCAGTCTGAAGAGCAACAGAGAAGATAACGGACAAACAGGAGGACGTACAGTACGTGCGGCGCCAACGGGTTTTAGTGACGAGACCAGAGCCAACGCTGGCCGGCAGTGAGGAGATTAAAATGGAGGGCTGCAAAGGAAAGCAGTCTTTTCTCCTCGTCTTATCAGGAAACAACCAGCTGCTCTCTACATCATTACACTGACGTGGATGAGAACACTCTGGAGTGACGTAAACCTCGCAGGACTTCTTCTCATCCCGTCTTTTCGGCGTCTCGATTCTCAACGTGCTCTTCGAGTGAGATCAAACTTTTGATAAAGCTACAGTGATttctaccacagcactgtttgaatttcttttctataacagcagctctgacagcagtgcagctgcaagtcacaggtttatattctcCTCTAGTTTCTATAGCAacttcttctttgtttttaaaaaaaaaagaaaagaaaaacacaattggtgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577870.1 lncRNA downstream 2432 31657051 ~ 31675951 (-) False LOC117596876
XR_004577871.1 lncRNA downstream 2432 31657051 ~ 31675951 (-) True LOC117596876
TU66118 lncRNA downstream 45057 31633095 ~ 31633326 (-) True G56173
TU65916 lncRNA downstream 354919 31323154 ~ 31323464 (-) True G55992
TU65343 lncRNA downstream 1055178 30619177 ~ 30623205 (-) True G55449
TU66258 lncRNA upstream 115 31687263 ~ 31687472 (-) False fndc5a
TU66264 lncRNA upstream 41625 31728773 ~ 31730112 (-) True G56279
TU66256 lncRNA upstream 130105 31817253 ~ 31827134 (-) True G56271
TU66315 lncRNA upstream 157889 31845037 ~ 31846195 (-) True G56315
TU66299 lncRNA upstream 172659 31859807 ~ 31933590 (-) False G56305
XM_026939215.2 mRNA downstream 58052 31613602 ~ 31620331 (-) True slc30a10
XM_026939213.2 mRNA downstream 129750 31545901 ~ 31548633 (-) True LOC113541990
XM_034303155.1 mRNA downstream 153483 31519040 ~ 31524900 (-) True LOC113541870
XM_026939480.2 mRNA downstream 652538 31022661 ~ 31025845 (-) True si:ch1073-126c3.2
XM_026939518.2 mRNA downstream 671921 30920905 ~ 31006462 (-) True gfra1a
XM_034302701.1 mRNA upstream 309361 31996509 ~ 32006650 (-) True gphb5
XM_034302615.1 mRNA upstream 444299 32131447 ~ 32188846 (-) False esr2b
XM_034302614.1 mRNA upstream 444299 32131447 ~ 32188846 (-) False esr2b
XM_034302616.1 mRNA upstream 444299 32131447 ~ 32188844 (-) False esr2b
XM_034302613.1 mRNA upstream 445333 32132481 ~ 32188847 (-) False esr2b
TU66090 other downstream 77698 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 129750 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 817877 30860436 ~ 30860506 (-) True trnag-gcc_4
trnag-gcc_3 other downstream 826376 30851937 ~ 30852007 (-) True trnag-gcc_3
trnag-gcc_2 other downstream 922907 30755406 ~ 30755476 (-) True trnag-gcc_2
TU66257 other upstream 140666 31827814 ~ 31829484 (-) True G56272
TU66291 other upstream 150034 31837182 ~ 31838235 (-) True G56303
XR_004577843.1 other upstream 552453 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 663653 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 687188 32374336 ~ 32389144 (-) False ndufaf1

Expression Profile