RNA id: TU66294


Basic Information

Item Value
RNA id TU66294
length 2257
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G56305
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31859807 ~ 31933590 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttaaaataattaaacatttgtcATTTCTCCAACCCACTTTGACTTTCTGTCATCATTTATTTCAAGGctcaccacaaaaaaaaatgagtctGGTTGAATCGGAGACCTCCACAATCCCACAatcccctcccctctctctctctctctctctctctctctatcacactctctctccttatATATGCAACTAAAAAAGTTCAGAAGGCTGAAATTTGAAAATAAGGAGTAAAAATggagaaagggggaaaaaaaagaaagaaaattaaacagcGAGTGGTGTtcagtaatacatttttaacactCTGTGACCTTCcctaaagaaaaatatatatatttataaatgcgCTAAAGGTTCTAATAGATCAATCAACAACAGATCAATGAGCTGCATTCAGTTACAATATTTAACACTGTAagaaactctcacacacactcgtacacacaaACAATACGAGCTTCTCAGGTTTGGCGCAGGGACGCTGGGTCCTCGGTGTCTTCGCAGCAATggggtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtttactGGTACCAGTGCCAGACTGGTGCAGAATCAAGAGAGGAAGTCCAAAAAAACCAACCCAAGAGAGAATGAGTGGAAAGTCCTGGCAGCACCGAGAGAATAGAAAAGAAGTTTGTGTTAATGagattgtgattgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatcactGTATTACCTCTGGCGATCTGACTTGTAGGTGGCAGTGAGTTCATCAAACAAAGTGCTGTTCATTTCCATGAAGGCTTTCAGGACGTTGTACACTAAAGCTACGATCGCCCTGAACAcagcaaagaggaaaaaaaagcttatcACATAGCAGAAAGGGAACCTCAGATTGCAGGGAATATtttcacacgtgtgtgtgtgcgcgtgtgtgtgtgtttatgcactCACGGGTTCCAGTGCTCTTTGGAGATCCTGTACAAGCTGGCGAACATGATGGGCAGGATGACGCTGGAGTTCTCCTCAATAAGACTCATAATGTACTCATTATTCCAGTAGTACAGTGCTCGCTCagccacctacacacacacacacacacacacgcacacacacacgcacacacacgcacacacacgcacacacacgcacgcacacacacgcacacacgcacacacgcacaattTTCATTTCTAGTCAATcatttaagaaaagaaatattttggcAGCAAAGCAGGAAAACTGTTAatccagcactttttttttttttttttagaaagcatgTGGGTTGTTTGAGCACACAGAGATAAAGTGAGATTAGAGACAGGACATGCCCACAGGTGTTCAGCGTAGAGTGACGTGAGTGAAGTGAGATGAAAAATCACTGCTGGTGTGAGCGCTAAAGAAAACAGTGTACCTACCAAAGCAGAAAAAACTTCTATTCCTGTAACTGTTATTCTGAAAAGTGTAATTTTTCAGGCCCTTAAATGCCACAGCATCTAATTTTAGCGATGCACTGACCTGGAAGTGAGGGCTGGAGACGCATTTGGAGATCTGCTTGAACAGCGGCTCCTGGATCTTCACAAACTGCGTGGGCTCGATCACGTCCAGAATCTCCTCCAGCTCTCCGAGGAACATCACCTACAACCACGGAGACGCGTTAAAGCCCGAGACACGCACAGCTTCCTGTACGTTCATTCACTTTATTCTCTTCATCTTTAATAAACGCACCTCTTTTTGACTGCACGTCTTTGGCCAGAACTTGAGAAGTCCTCTAATGACCTGcacagaggaaagagaaatgCATCACCAAAAAGTACATTAGAAGTAAAACGTACccagatacaaacacacagaacagtgaAAGGTACAAACGGCACTCACTGGTTCTGTTAATGTGGGGTCTTTCTCTAGGAACTGTACAATACAATATGCCAACTGCAaaacagcagaaacacacaccgCAACTGACAATTAGACaatcaccacaaacacagaaTACAGCAAATTTCCTGGATTTGTTTCCACGGATTTCAGTTTccgctcaaaaaaaaaaaaaaaaaaaaaaacattcactaaTGCTGTTttccacaaataaaaaattaattaccaTTTTTGGAAATACCGAGATGAACCCTGCAtcccaaatactttttttttttttttttttttaaacacattaaaggCGCACTGATAAACATCTGGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66315 lncRNA downstream 83815 31845037 ~ 31846195 (-) True G56315
TU66256 lncRNA downstream 102876 31817253 ~ 31827134 (-) True G56271
TU66264 lncRNA downstream 199898 31728773 ~ 31730112 (-) True G56279
TU66258 lncRNA downstream 242538 31687263 ~ 31687472 (-) False fndc5a
XR_004577871.1 lncRNA downstream 254059 31657051 ~ 31675951 (-) True LOC117596876
TU66675 lncRNA upstream 137173 32070763 ~ 32072498 (-) True G56614
TU66676 lncRNA upstream 137173 32070763 ~ 32072498 (-) False G56614
TU66738 lncRNA upstream 273899 32207489 ~ 32208007 (-) True G56675
TU66757 lncRNA upstream 310333 32243923 ~ 32244290 (-) True G56693
TU66733 lncRNA upstream 366716 32300306 ~ 32309955 (-) True G56670
XM_034302651.1 mRNA downstream 99078 31678383 ~ 31830932 (-) False fndc5a
XM_034302648.1 mRNA downstream 99082 31678383 ~ 31830928 (-) False fndc5a
XM_034302647.1 mRNA downstream 99082 31678383 ~ 31830928 (-) False fndc5a
XM_034302646.1 mRNA downstream 99082 31678383 ~ 31830928 (-) False fndc5a
XM_034302645.1 mRNA downstream 99082 31678383 ~ 31830928 (-) True fndc5a
XM_034302701.1 mRNA upstream 62919 31996509 ~ 32006650 (-) True gphb5
XM_034302615.1 mRNA upstream 197857 32131447 ~ 32188846 (-) False esr2b
XM_034302614.1 mRNA upstream 197857 32131447 ~ 32188846 (-) False esr2b
XM_034302616.1 mRNA upstream 197857 32131447 ~ 32188844 (-) False esr2b
XM_034302613.1 mRNA upstream 198891 32132481 ~ 32188847 (-) False esr2b
TU66291 other downstream 91775 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 100526 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 329325 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 381377 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 1069504 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577843.1 other upstream 306011 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 417211 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 440746 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other upstream 440756 32374346 ~ 32389144 (-) False ndufaf1
TU66930 other upstream 720246 32653836 ~ 32661562 (-) True slc66a3

Expression Profile