RNA id: TU66315


Basic Information

Item Value
RNA id TU66315
length 1009
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G56315
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 31845037 ~ 31846195 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaaaaaaacacacaatatttaCAGATGTTTTGAGGTATGATCCACTTTGGGtgttaagcattaaaataaaaaacaaaaatctgtccCTATTAAAATACATCTCTACAGTATTTCCAGTACATTTTGAATAACATCCAATCAGAAGAGACCTGTCGCAAGGCCGTCCAATCGAATGTGACCCGTCACAGACCCGTCCAGATTAAACACATCTGTTAGCAAGAGACCCACCAGTTAGAGACAACTTGTCACAAGCCCTTAGAATCAGTAGTGATCTGTCACAAATCTGTCCAATCAGACACAACCAGCTATAAGCTGGTCCAATCATACTTCAGCTGTTACGAGTCTGTCCAATCAGACATGCCCTGTTGCAACTCTATTCAATCAAACTTGACCTGTTACAAGCCCGTCCAATCAGACCCACTTGCTACAAGCCAGTCCAAACAGGAGTGATCTGTCACAAGCTTGTCTAATCAGATATGATCTGCTACAAGCCAGTCCAGTCAGATATGAGCTTTTACAAACTGCTTCTCTCAGACACAGCCAGTTACAAGCCTGTCCAATCAGACATGTCTCGTCACAAGCCCATTGAATCAGACAAGACCTGTTACAATCTCAGCCAATTAAACTTGACCTGTTATCAGCCTGTCCAATCAGATGCATCCTGATGGAAGCCTATCCAATCAAACACAGCATGTTACGAATTAGATAATACCTGTCACAATTCTGTCCAATCATGTCTCCTCTATTACAGGCCCAACCAATAACAAAATACAAGCCGTGACGAGCTCATAAAGTCAGATATTTGATAGGAATCAGACAAAACTCATTCcaattctgtccaatcagataCAATCCGTCATAAACCTGTCAGAACTCGTCCAAACAAACACAACTCGTCAGAAGGTCCTTGTGAATCAGATATGACACACCATGAGCCTGTCCAATCAGGGTTTGTAGTTTAGTGTTTACTACGCATGCGCTCTTTCCAGCTGAATCTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66256 lncRNA downstream 17903 31817253 ~ 31827134 (-) True G56271
TU66264 lncRNA downstream 114925 31728773 ~ 31730112 (-) True G56279
TU66258 lncRNA downstream 157565 31687263 ~ 31687472 (-) False fndc5a
XR_004577870.1 lncRNA downstream 169086 31657051 ~ 31675951 (-) False LOC117596876
XR_004577871.1 lncRNA downstream 169086 31657051 ~ 31675951 (-) True LOC117596876
TU66299 lncRNA upstream 13612 31859807 ~ 31933590 (-) False G56305
TU66300 lncRNA upstream 41486 31887681 ~ 31933590 (-) False G56305
TU66294 lncRNA upstream 83815 31930010 ~ 31933590 (-) True G56305
TU66293 lncRNA upstream 85741 31931936 ~ 31933590 (-) False G56305
TU66675 lncRNA upstream 224568 32070763 ~ 32072498 (-) True G56614
XM_034302651.1 mRNA downstream 14105 31678383 ~ 31830932 (-) False fndc5a
XM_034302648.1 mRNA downstream 14109 31678383 ~ 31830928 (-) False fndc5a
XM_034302647.1 mRNA downstream 14109 31678383 ~ 31830928 (-) False fndc5a
XM_034302646.1 mRNA downstream 14109 31678383 ~ 31830928 (-) False fndc5a
XM_034302645.1 mRNA downstream 14109 31678383 ~ 31830928 (-) True fndc5a
XM_034302701.1 mRNA upstream 150314 31996509 ~ 32006650 (-) True gphb5
XM_034302615.1 mRNA upstream 285252 32131447 ~ 32188846 (-) False esr2b
XM_034302614.1 mRNA upstream 285252 32131447 ~ 32188846 (-) False esr2b
XM_034302616.1 mRNA upstream 285252 32131447 ~ 32188844 (-) False esr2b
XM_034302613.1 mRNA upstream 286286 32132481 ~ 32188847 (-) False esr2b
TU66291 other downstream 6802 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 15553 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 244352 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 296404 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 984531 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577843.1 other upstream 393406 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 504606 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 528141 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other upstream 528151 32374346 ~ 32389144 (-) False ndufaf1
TU66930 other upstream 807641 32653836 ~ 32661562 (-) True slc66a3

Expression Profile