RNA id: TU66675


Basic Information

Item Value
RNA id TU66675
length 1692
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G56614
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32070763 ~ 32072498 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaatcagacAAAATTGTTCACAGAGGTGGAAGACgggatgaagaaagagagagcatgCGCAGTGTTAAGAGTTACATCGGTGCATTTACATGGAAACATGACGAGAATAAAAAgcataaattataataataataaaaaaaacaaaaaaaacaaaacaaaaaagcactttATTCTCCTGATTGCATTTCAAAACTCCGATTTCAGAAAAATGAGAATGTGTAAATGTACACTACGCACGTTGAAGTAGTTCGTTATGTAAACACGttctaggaaaaaaatcaatcgTCATAATTTTCATCAGCATCAGGCAACGTGAGTAAATCTTTAACTCGAGCTTACAGAAATTCTCATTCATTAAGGCACCTCGTAATACACACTGTTGTATTATACTTCATATAATACAATCTGTAGCTCATGGTCTTAGTAAGTCTTAGGTGAAACACATGCTATAAAATGGATTTAGGAGAGCACTGACATTTTGTCTTTAGCAAACTGAAGACAATGCTCAAAGTAGCATGCAATTATTAGCTATATAAAGTGCTTAGGAAACTAAACATTATCCAAAATTTTCAAGAGGCACTGATATTTCCAAAATTCGTTTGAATGTTTTCTCAGGTACAGTATAACTTAGgaagtttaatattaattagacatttaaaatgtcaaaagtcAGTCCTTTGGATACTGTGCatactattaaaaaaacttAGCAGatcaaaattttattaaaaaccctattttggaaattaaatatttttataccacagcactggtgATTgctctgttctgattggtcataaagtgtcgattaattttctattacagcagcactgacaatGACAGGGTTTGTATTAATCCGCTTGtcctaatacgttattgtttatttagttttttatttagaaaggAATCTCCTGTGCCAGAGTTCTGCAACAGTCAGAGGGGAGCTGTATGTTTAAGTTTTCCATCAAATTCCATCATATTTCTCTGTAATACAGTAAAGTCTGCATTacagtctgcattttttttgtcatattactttcaagaaagggaaaaaaaagaaaggctggtgagagaacgactgtttattgctgctataatgttAGCTTGGtttacagatgttccacaatgtaattttaaatggataaaaatgtacaatgcGTCATtcgttaaattattatttttttttttaaatgcaatcaccggtaaattgctgtggcataagaggaataaaacactctgacaAAAAGATTATGAGAATGTCCAGGATGTAAACATGTCAGAAAGAAATCTTTGGCTCTGTTCATTTTTCATAAGCGTCATTAACAATcttgccaataaaaaaaatgccaaaggCTCCATGTAAATGCACTGCACTTAAAAGCCATAAGGGTCCTAATTCTAGAATGTTTCAGGTGTACAGGTTCTAGAAAGCGAGTCTAGTTCTAGAATGATTCAGATGTACAGGTTCTAGAAGGCGAGTCTATTTCTAGAAGACCGAGAAGTTCCGTAAAAAGGGAGCTCTAGCACTAGGAGACCACACACTTCTGCTGGCCTCTGGGAGGAGACTTGGAGAGTTCTCTAACGAATGGGGTTTTGGTTACCAGCTCTCTGGGGGGAGATTGCGTTCTCACAGCAGCCTCTGGTTTAGACGCAGCTTCAGGATCGCTCGGCTCCGAGGCGACGCACTCGCCT

Function

GO: NA

KEGG:

id description
ko04371 Apelin signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66299 lncRNA downstream 137173 31859807 ~ 31933590 (-) False G56305
TU66300 lncRNA downstream 137173 31887681 ~ 31933590 (-) False G56305
TU66294 lncRNA downstream 137173 31930010 ~ 31933590 (-) True G56305
TU66293 lncRNA downstream 137173 31931936 ~ 31933590 (-) False G56305
TU66315 lncRNA downstream 224568 31845037 ~ 31846195 (-) True G56315
TU66738 lncRNA upstream 134991 32207489 ~ 32208007 (-) True G56675
TU66757 lncRNA upstream 171425 32243923 ~ 32244290 (-) True G56693
TU66733 lncRNA upstream 227808 32300306 ~ 32309955 (-) True G56670
TU66724 lncRNA upstream 308629 32381127 ~ 32381831 (-) True G56661
TU66731 lncRNA upstream 327417 32399915 ~ 32400310 (-) True G56668
XM_034302701.1 mRNA downstream 64113 31996509 ~ 32006650 (-) True gphb5
XM_034302651.1 mRNA downstream 239831 31678383 ~ 31830932 (-) False fndc5a
XM_034302648.1 mRNA downstream 239835 31678383 ~ 31830928 (-) False fndc5a
XM_034302647.1 mRNA downstream 239835 31678383 ~ 31830928 (-) False fndc5a
XM_034302646.1 mRNA downstream 239835 31678383 ~ 31830928 (-) False fndc5a
XM_034302615.1 mRNA upstream 58949 32131447 ~ 32188846 (-) False esr2b
XM_034302614.1 mRNA upstream 58949 32131447 ~ 32188846 (-) False esr2b
XM_034302616.1 mRNA upstream 58949 32131447 ~ 32188844 (-) False esr2b
XM_034302613.1 mRNA upstream 59983 32132481 ~ 32188847 (-) False esr2b
XM_026939147.2 mRNA upstream 59983 32132481 ~ 32188845 (-) False esr2b
TU66291 other downstream 232528 31837182 ~ 31838235 (-) True G56303
TU66257 other downstream 241279 31827814 ~ 31829484 (-) True G56272
TU66090 other downstream 470078 31563555 ~ 31600685 (-) True G56150
XR_004577789.1 other downstream 522130 31546360 ~ 31548633 (-) False LOC113541990
trnag-gcc_4 other downstream 1210257 30860436 ~ 30860506 (-) True trnag-gcc_4
XR_004577843.1 other upstream 167103 32239601 ~ 32289607 (-) False brf1a
TU66783 other upstream 278303 32350801 ~ 32354482 (-) False tmem39b
XR_004577855.1 other upstream 301838 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other upstream 301848 32374346 ~ 32389144 (-) False ndufaf1
TU66930 other upstream 581338 32653836 ~ 32661562 (-) True slc66a3

Expression Profile