RNA id: XM_026939074.2


Basic Information

Item Value
RNA id XM_026939074.2
length 1505
RNA type mRNA
GC content 0.43
exon number 7
gene id slc66a3
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32653836 ~ 32661612 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGCGTTGGGTCAAAAAGCTCTCGCTGACGTGGGCGGAAGAGTTTTCGCAAGCTTCCGCGTAGTGAGTGGTTTATCAGGAATCGAGCAGCTTAGGGAAGATTTCTGCATCTGAGTGGCTGAGCACAGGGACAAGATGGAAGGAGacttgctgctgctgcatgTCGCTAATTTCAGCACGTTATTGGTGTGCATGGTGCTGAAACTGCCCCAGATTGTGGTGCTGATGAGGGCGAAGGCGACCAATGGAGTGAGTGTGACCAGCCTGCTGCTGGAGCTGACCGGgtttATAGTGTTTGTCTCCTATCAGATGTACTATGATTATCCTCCTCCTACGTACCTGGAGTATCCCATCCTCATTGCACAAGatgtGATCCTGCTGATTCTCATCCTGCACTATAATAGAAACATGAAGCACAGTCTCATCTATGCAGTTGTGTTTGTAGGCGGCTGGAAACTGCTCACCATGGAGAAATGGATCATCGACACGGCCATGagtGTGTGTACGCTCATCAGCGCGGGCAGTAAACTCCTGCAGCTTCAGTGTCTGTGGAGATCCAAAGACTCGGCGCAGGTCAGCACTTTAACCTGGGCGTTAGCGTCGTACACGTGTATGGCGAGGATCTTCACCACAATGGTGACTACTGGAGACACTCAGGTTCTGATCCGCTTCATGGCCATGGCGGTTCTGAACGTGTGGGTGACGGCCACGGTGATCTACTACAAACCCAGCACCAAGAAACGTGACTGAGACTGAGTGATtctgacatcacttcctgtcacgTAGAAATGTCGTTCGCTTGGTATGAATGTTAGAATAGGTGTGCGAGTGAGTTAGTGAATGAAATATGCAACGTACCAAGGACCAACACTCTTAACTGAACCAGCACAGCTTGGAGCTGATTGgttagttccttttttttatctttttaattcCTTATGAATAACATGTTATACAGTTACTGATCACCTTTAACGCTTCTTGACTCAGGGTTCTggtttattctttcttttcactttaatATTGCCTTACAGCAGTATTTGGATgaatatatataacaatatcagCACCTCGTTATTAACAGTTCTCCAGCAGTAACATTAATAAGTGTATACATTTTGTACATCCTCTGAGGAAATAGGAGAATTAATGGTGTCTAATGTGCCACCACACACTTCTGAAACATTCCCATTAGGCTTTTGTGAACTTTCCTCAAAACTTTGTAGgtaattctttcatttttaatacttctgTTAATCTTAGCTTTATATTGTATGCAGATGGAGTAGAGTTAACTTTTGTAAAAACTAGCTGGACCAAACTtctataaatatacagtgtttacatttacagtggaAGGATGTACACaatactatatttttaaaaaacgttCATATCCAAGCTAGATAGATTGTGCTATAATGTCATTTAGTATTTGCTGAAATGAGTTTTGTCTTCCAGACTGGgtctgaaaaactcaaaaataattatatccAAAGAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66925 lncRNA downstream 7180 32644692 ~ 32647936 (-) True G56827
TU66735 lncRNA downstream 239656 32414909 ~ 32415460 (-) True G56672
TU66731 lncRNA downstream 254806 32399915 ~ 32400310 (-) True G56668
TU66724 lncRNA downstream 273285 32381127 ~ 32381831 (-) True G56661
TU66733 lncRNA downstream 345161 32300306 ~ 32309955 (-) True G56670
TU66932 lncRNA upstream 2269 32663881 ~ 32664343 (-) True G56834
TU66958 lncRNA upstream 52117 32713729 ~ 32713933 (-) True G56860
TU67281 lncRNA upstream 68272 32729884 ~ 32775597 (-) True G57126
TU67331 lncRNA upstream 137499 32799111 ~ 32800472 (-) True G57169
TU67378 lncRNA upstream 405922 33067534 ~ 33068685 (-) True G57215
XM_026939383.2 mRNA downstream 119497 32525404 ~ 32535619 (-) True arg2
XM_026939096.2 mRNA downstream 138482 32509524 ~ 32516634 (-) True rdh12
XM_026939177.2 mRNA downstream 172102 32478301 ~ 32483014 (-) True si:ch211-10a23.2
XM_026939393.2 mRNA downstream 265972 32386260 ~ 32389144 (-) True ndufaf1
XM_034302913.1 mRNA downstream 274079 32375964 ~ 32381037 (-) True nusap1
XM_034303020.1 mRNA upstream 7894 32669506 ~ 32710211 (-) False sobpa
XM_034303017.1 mRNA upstream 7894 32669506 ~ 32710211 (-) False sobpa
XM_034303019.1 mRNA upstream 7894 32669506 ~ 32710211 (-) False sobpa
XM_034303015.1 mRNA upstream 7894 32669506 ~ 32710211 (-) True sobpa
XM_034303024.1 mRNA upstream 7894 32669506 ~ 32710111 (-) False sobpa
XR_004577855.1 other downstream 265972 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other downstream 265972 32374346 ~ 32389144 (-) False ndufaf1
TU66783 other downstream 300634 32350801 ~ 32354482 (-) False tmem39b
XR_004577843.1 other downstream 365509 32239601 ~ 32289607 (-) False brf1a
TU66291 other downstream 816881 31837182 ~ 31838235 (-) True G56303
TU67278 other upstream 54215 32715827 ~ 32728741 (-) True G57124
TU67373 other upstream 357666 33019278 ~ 33099572 (-) True G57210
TU67383 other upstream 678610 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 762057 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 793610 33455222 ~ 33462342 (-) True G57322

Expression Profile