RNA id: TU66958


Basic Information

Item Value
RNA id TU66958
length 205
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G56860
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32713729 ~ 32713933 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGAGTTTAACGAGAGTCTTTTTTCCATCTATGGAGGATTGTTCACTGCTGCCTTCACCCACACCTGTCCACTTTAACCAGGACCACATCCTGGATGACGAGATGCCGCGTGTTTTTGGAGTCCATGTTTGAGTCCATGTTTGAGTCGAGGAAACATGAAGGTGATGGAGAGCCGCAGGATCGTCACTGGGAAACATCCGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66932 lncRNA downstream 49386 32663881 ~ 32664343 (-) True G56834
TU66925 lncRNA downstream 65793 32644692 ~ 32647936 (-) True G56827
TU66735 lncRNA downstream 298269 32414909 ~ 32415460 (-) True G56672
TU66731 lncRNA downstream 313419 32399915 ~ 32400310 (-) True G56668
TU66724 lncRNA downstream 331898 32381127 ~ 32381831 (-) True G56661
TU67281 lncRNA upstream 15951 32729884 ~ 32775597 (-) True G57126
TU67331 lncRNA upstream 85178 32799111 ~ 32800472 (-) True G57169
TU67378 lncRNA upstream 353601 33067534 ~ 33068685 (-) True G57215
TU67441 lncRNA upstream 520733 33234666 ~ 33235712 (-) True G57267
TU67449 lncRNA upstream 543296 33257229 ~ 33257792 (-) True G57275
XM_034303020.1 mRNA downstream 3518 32669506 ~ 32710211 (-) False sobpa
XM_034303017.1 mRNA downstream 3518 32669506 ~ 32710211 (-) False sobpa
XM_034303019.1 mRNA downstream 3518 32669506 ~ 32710211 (-) False sobpa
XM_034303015.1 mRNA downstream 3518 32669506 ~ 32710211 (-) True sobpa
XM_034303024.1 mRNA downstream 3618 32669506 ~ 32710111 (-) False sobpa
XM_026939072.2 mRNA upstream 45738 32759671 ~ 32764344 (-) False mtres1
XM_026939073.2 mRNA upstream 45738 32759671 ~ 32764340 (-) False mtres1
XM_026939071.2 mRNA upstream 45738 32759671 ~ 32764304 (-) True mtres1
XM_026939056.2 mRNA upstream 151312 32865245 ~ 32868355 (-) True rdh14a
XM_026939055.2 mRNA upstream 381723 33095656 ~ 33104243 (-) True osr1
TU66930 other downstream 52167 32653836 ~ 32661562 (-) True slc66a3
XR_004577855.1 other downstream 324585 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other downstream 324585 32374346 ~ 32389144 (-) False ndufaf1
TU66783 other downstream 359247 32350801 ~ 32354482 (-) False tmem39b
XR_004577843.1 other downstream 424122 32239601 ~ 32289607 (-) False brf1a
TU67278 other upstream 1894 32715827 ~ 32728741 (-) True G57124
TU67373 other upstream 305345 33019278 ~ 33099572 (-) True G57210
TU67383 other upstream 626289 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 709736 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 741289 33455222 ~ 33462342 (-) True G57322

Expression Profile