RNA id: TU67281


Basic Information

Item Value
RNA id TU67281
length 504
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G57126
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 32729884 ~ 32775597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTTTATTATCTAATAAAAATCTGTACAAAGAATCGCAAACAGAGGAAACACCATACGTTAGATTTACAcacataaaacctttttttaccgtaaaacaaaataaaaacaaaccttcATAAGGTTCtgtaaatcttttatttttacaaaataaaaggaGAGAAGCATTAATGAGTCTTTAAGTTTTAATATGATGGACTTCAAGCTACTTTGAGTAAACAGTAATTGTACTTTAGTTAAGattaacacacttttttttaaagacaaatgcaAAGCAGCAGAGGAAAGAGGAACGGTTACGAGGCTCGGCTACGAGAGAGCGGCGAGTTGCTGCGTGTTAGCGAAGGACAACGtcgtcgtgtgtgtgtgtgtgtggattcagCGCAGCTGGAACTGATCGACTCTTCTCGAAAGATCGTCCAGTGTGAACAGTCAAGGAAAACacagatataaataaacataaaaccaAGTGCACAGACAttaaacacacacacacatacacacag

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66958 lncRNA downstream 15951 32713729 ~ 32713933 (-) True G56860
TU66932 lncRNA downstream 65541 32663881 ~ 32664343 (-) True G56834
TU66925 lncRNA downstream 81948 32644692 ~ 32647936 (-) True G56827
TU66735 lncRNA downstream 314424 32414909 ~ 32415460 (-) True G56672
TU66731 lncRNA downstream 329574 32399915 ~ 32400310 (-) True G56668
TU67331 lncRNA upstream 23514 32799111 ~ 32800472 (-) True G57169
TU67378 lncRNA upstream 291937 33067534 ~ 33068685 (-) True G57215
TU67441 lncRNA upstream 459069 33234666 ~ 33235712 (-) True G57267
TU67449 lncRNA upstream 481632 33257229 ~ 33257792 (-) True G57275
TU67469 lncRNA upstream 521222 33296819 ~ 33298313 (-) True G57290
XM_034303020.1 mRNA downstream 19673 32669506 ~ 32710211 (-) False sobpa
XM_034303017.1 mRNA downstream 19673 32669506 ~ 32710211 (-) False sobpa
XM_034303019.1 mRNA downstream 19673 32669506 ~ 32710211 (-) False sobpa
XM_034303015.1 mRNA downstream 19673 32669506 ~ 32710211 (-) True sobpa
XM_034303024.1 mRNA downstream 19773 32669506 ~ 32710111 (-) False sobpa
XM_026939056.2 mRNA upstream 89648 32865245 ~ 32868355 (-) True rdh14a
XM_026939055.2 mRNA upstream 320059 33095656 ~ 33104243 (-) True osr1
XM_034302726.1 mRNA upstream 320059 33095656 ~ 33102293 (-) False osr1
XM_026939447.2 mRNA upstream 511204 33286801 ~ 33293343 (-) True LOC113542112
XM_026939217.2 mRNA upstream 530715 33306312 ~ 33321663 (-) True hif1aa
TU67278 other downstream 1143 32715827 ~ 32728741 (-) True G57124
TU66930 other downstream 68322 32653836 ~ 32661562 (-) True slc66a3
XR_004577855.1 other downstream 340740 32374336 ~ 32389144 (-) False ndufaf1
XR_004577854.1 other downstream 340740 32374346 ~ 32389144 (-) False ndufaf1
TU66783 other downstream 375402 32350801 ~ 32354482 (-) False tmem39b
TU67373 other upstream 243681 33019278 ~ 33099572 (-) True G57210
TU67383 other upstream 564625 33340222 ~ 33344809 (-) False slc38a6
TU67416 other upstream 648072 33423669 ~ 33429769 (-) False lrrc9
TU67506 other upstream 679625 33455222 ~ 33462342 (-) True G57322
trnag-gcc_5 other upstream 754330 33529927 ~ 33529997 (-) True trnag-gcc_5

Expression Profile