RNA id: XM_034302706.1


Basic Information

Item Value
RNA id XM_034302706.1
length 4795
RNA type mRNA
GC content 0.52
exon number 30
gene id lrrc9
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33423664 ~ 33442815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGGGAGAAACTTTTCCAGAGCACGAGCTGGCTAAAACAAACACGAccactttaaaaacattaattccTTCTCATGTTAAACTTTATAGTGATATTTACTGTCTTGTTTAACTGTAGAAAGTAGAAATTTTCTACAAACGATGTTAGAAATGAGCTCGCTTCTACTGTAGTTTAATTGTGAAGAATAAAGATGCGAGTGAAAGTAATAAAATGATAGCAGCGCCCTCTGCTGGCCGAATGagggatttattttacaattccAATATGGCGCCTAATTCCAAAATGGCGCCTTAGCAACCGAGTCGCGGTCGCGCTTAGCAACCGGTAGAAGTAAACATTTCACGGAGGAAGAAACTCCGGTGTGGAAGCTCAGAAATGCGTTTTTAGCCAAAGAAGAAGCGAAATATTTGGATTTTCAGTCGACTATGTCCCTTATTCAGGCGAAAAAGCTTCACTTTAAACACCTGCTGTTAGATACTGGACTAACTCGGAGCAGTTAGCTAATGATGAACTGCTAATTGACTTGTGTGAAGGAATTTGCATtaattagcttagcttagcctAGCTATGCGGCTAGATTTAGTTTCTAATAAATTAAGATAAAGTTTTGATTTTTGTAAAAGCGGTGTTTTAAGGAAAATCATGACTCAAAGTGAAAAAGTGCGACAGAATGATGAAGAAATTATCAAAGAGCTGtgtgtgtgtaacggcGTGTCCTATGAGAAGGTTCGTGAGGACGGGAGTGGGGTAGAGGCTCTCGAGGCGTTCTTCTCAGGGTTTCCCCGCATGGTGGGACTCTCTCTGTTCCCCCGGCTGCTCTCGCTCACCATCGTGGGGCAGAACGTCCGCAAAATCCAGGGGCTGGACGACTGTCCGCGTCTCCGCGAGCTCTGGGTGGCAGAGTGTCAGCTCACTGAGATCTCAGGTCTGCAGAAGTGTGTGCAGCTGCAGAAACTGTTCCTCTATGATAATAAGATCAGCGAGATGAGCGGAATGGAGTCACTGATAAACCTGAGCGTCCTCTGGATCAACAACAACCTCGTCACCGAGATCAAGgGCTTGAGCACACTGGAGAACCTGACGGAACTCAACCTAGCTGATAATCTCATTACAACTATAGgaAAAAGTCTAGAGCAAAACAAGAATCTCCAAAGTCTCAATCTGTCAGGAAACAAGATCAGCTCTTTTAAGgagctGACCCAGCTGGCGTGTCTGACTGAGCTGAGAGAACTCGGGCTGAACGACCCGCAGTCGAGTCCGAACCccgtgtgtgtgctgtgtaatTACTTCACACACGTGTTGTACCACATCCCAACGCTACACACACTCGACTCGTATGACGTGTCCGCAAAAAACATCAAGGAGGCTgccgagtccacggtgatgaagaagaggatgTACTATCACATGCGTGTGCGCTGTGTGCAGAGACAGCTCGATCAGAcgaaacacacactgcagctacaGAAGAAGAAGCTGCGGCAGATACCTGAGGACAGAATACACACTCTCagctacacactcaaacacTTGGAGTGTGAGTACGAGGCTGCAGGCAGGCAATTGGCAGGTTTGCGAGAGGAAGTGACATCGCAGGGGTCGGGTGAAtacatgacctctgacctttctaaAGAGATGAAGATGAAACTGAAGGCAATCAGAGAGCGGATTAAGTTCTGGGAACAGAGATTagaggaggtGGAGGCACGTTTCCAGCAGGACGTTGCCATGGCGTCAGACAGGAAGGACATGTCGATTCACTTCCTGGTGATGGAACTGGAGACGGTGGGAAACATTCGCTTTGAGGAAGGAAACACCAGCCATGCCTGgtttAAGCCGTGTTACGACCTGCTGCTCTCTCGGTTCTGCGTCTGGGACTTCAAAGCGTACAACATCACCGGCCTGAAGATCAACAGGATCGTGCGCGTGCATAACCGCGTCCTGCGTCTGCGCTTCGAGGACAGACTGCACGCCCTGCTGGCGAACAACGAGTCCTCGCTTCTCTCGCAGAACTACAAACGCCGCCTGGAGTATCTGTTTTATGTGTTCGATCCTGAGGAAATCCAAAGAACCAACGAAATCCTGAACATTCTGGAGAAGGGGTTTAAATCAGCTGACGGTTATAAGgcCTTGGGTAGAGACTGTGCTGTGCCTCTGTCTAACAGCGTAAGCGCGTGTGAGGAGCCGCATGTAAGATTTGTTCGGAGAAAAGCCACCAGACGTGGAACCGAAAGCGCAGAGAACCCTCTGCCCTTCACACAGGGTCTGGATCTGGGAGCAAGAGACAAGGGGCAAGTGTGTGCGATGTGTGTGGAGTGTCAGATTGAGTGTGAAATGAGAGGATGtggcaggaggaggaagaggtgtGAGGATGgagaaGTGTATTCCTCTGAGCTGCAGGGATGCTGTGACTGCAGTCAGAGAAAAACTCTGTGGTACGTTTTCGACCGCGAGCTCGTTCTGCCGGAGTATCTCATCGACTTTGAATATGTCACGCAGGAGAGATCGCAGTCCTCCTGCCCTCCCAAAGCCCCTGCTGCCCCTGATGATGTCACACCGGGGTGTAACGATGAGCAGGCCCTGGACGAGCAGGTGTTATCACTTCAGCCCGTCCCGAAGCCACGACCCAAACTGCTGAGCCTGGACGAGAGTAGTGTCCTGACAGCGGCTCGAGCCAACGTCCTCAGCCAGATCACCgTGCTGAATCTTCACGGGAACAGTCTGAGCAGGCTGAAGGAGATTTCTCGCCTCACGGCGCTGCGGCAGCTGATCATCAGCTTCAACGCCCTCACACACCTGGACGACGTTTCACACCTGCCCAATCTGGAGTGTGTGGACGCCAGTTTTAACCAGATCGTGACTCTGGAAGGCGTTCGAGGACTTCCCCGTCTCAGAGAGCTGGACCTGCGCTGGAACCAGCTGAGCCGAGTCCGAGAGGAGACGAGCGTCCtgcgcaaacacacaccatctctGCTGCGCCTCCATGCCAGACACAACCCGTGGAGTCAGggtgagTCAGTGCGGATGGTGGTGTTGGGCCAGTTGAAGAATCTCACACACCTGGATGGAGTGTTAGTGACGGAGGAGGAGGTGGCAGCTGCTACACACGTGAACTCCACCTCCAAGATCAacctgatgttgcTGCTCTCTCACTCCCGTACCGATGCCGATCGTCCGCGCTGCCTGAGTCTCCTCACTGTGGCCCAGCTCCTCACACACCTCAAACCATCGCCATGGAAACACACCACTGACCTCGAACCTGGGTGGGGTGCCAAggtcaCAGCGTTGAATCTGGACGGTCAGCGTCTGTCCCACATCAGTAATCTGGAGCAGCTGGTGAATCTGCGCTGGGCTTCGTTTAATAATAACCAGCTCACACACATCGAGGGGCTGCAgcactgccccctgctggaggAGCTGTCACTGAACCACAACTACATCTGCACACTGGAGggtgCGTGTAAGCTCCAGCGTCTGACGCGACTCAGCATTAACAGTAATCAGCTGCGATGTTTGGACGCCTCTGTGTTGGACCGCCTGACGAATCTCCACTTCCTGTCCGCTGAGGACAACTGCATTTCCTCCCTGCAGGGGGTTCAGAGGTCACGCTCACTGTTTGAGCTTTATGtcagcaacaacaacatcagcaCCTCGCGAGACATCTATCACCTGAAgACTCTGAGTAACCTGATCATCCTGGACTTGTACGGCAACCCATTAACAAGAACACTGGAGAATTATCGAGCTTACCTCATCTTTCACCTGCCGTCTCTGAAAGCTCTGGATGGGACTGCTGtgGAGATGTCAGAGTGTGAGAATGCGAAGGACGTGTTTGGAGGTAGGCTGACGGCGGACATGTTGGCTGAGAAACTCGGTCAGTGTGACtacagagagatggaggagctGGAGCTCCCGGGCTGCTCCGTCAGGACGGTGGATCTGGCTCCCGCTGAGCTCTTCGTGAATTTACACAGCTTGAATCTAGAGCGGAACAATCTCACCTCCTTCAGCGGCCTCGTCTACCTGCCCAACGTCAAGGTGTTGTGTCTGAACTACAACCACATTGAGTCGATTCTGCCAcgtcagaaaacacacactcacctgagcAGCAGACAGCAGCTCTATCAGAAAGTTCACTCCAGCGGCTACGGACAGCAGATCAGCAAGAGcagcagtaaggagtgtgtgtgtgtggagagtctGGAGCCTCTCATGTGCAGCTTGGAGGTTCTCCATCTCGGCTATAACGGCATCTCCAACCTCAGCGATGTGCAGCTGAGTTGCCTGAGCGGCCTGAGAGCTCTGTTCCTGCAGGgtaaTGAGATAGTGCAGGTGGAGGGTTTGGACGGTCTGAGTCTCCTGCGTGAGTTGGTGTTGGATCAGAACCGAGTGAAGACGCTCAGTGAGAAATggttcagctcacacacacgcctgaTCGAGCTGAGCCTGAACGACAACCGCCTGCGCAGCCTCACACACCTGCAGCTCACACACCTGCAACGCCTGCACCTCAGCAACAACAAGCTGCaggatatcACAGAGTTGGATAAACTGGAGGTTCTTACATCACTTGTAGAACTGTCTGTGGTGGGCAATCcggtggcgCGGCGCTCCCTCCACAGGCCTTCTGTGGTTCTGCGTCTCCCTCAGCTGCAGGTACTCGATGGAATCACGGTCACACTGGAGGAACGAACACGAGCAGAGTTACTGTgtactgagGACACACCCTCCTGTGTGGACGGGGCGTTCCCTGTCGTACTGTGTCGTGCTCCACCTGCCCGAAACTCCGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67500 lncRNA downstream 1190 33421824 ~ 33422474 (-) True G57317
TU67395 lncRNA downstream 12211 33410548 ~ 33411453 (-) True G57223
TU67483 lncRNA downstream 12893 33365057 ~ 33410771 (-) True G57302
TU67405 lncRNA downstream 17538 33370775 ~ 33406126 (-) True G57232
TU67396 lncRNA downstream 48163 33369860 ~ 33375501 (-) True G57224
TU67389 lncRNA upstream 22884 33465699 ~ 33467307 (-) True G57220
TU67393 lncRNA upstream 37533 33480348 ~ 33520877 (-) False mycla
TU67394 lncRNA upstream 76811 33519626 ~ 33520877 (-) False mycla
TU67519 lncRNA upstream 92663 33535478 ~ 33535975 (-) True G57335
TU67540 lncRNA upstream 128595 33571410 ~ 33572419 (-) True G57354
XM_026939485.2 mRNA downstream 19940 33389493 ~ 33403724 (-) True six4a
XM_034301294.1 mRNA downstream 35845 33385114 ~ 33387819 (-) False six1a
XM_026939310.2 mRNA downstream 35845 33385114 ~ 33387819 (-) True six1a
XM_026939307.2 mRNA downstream 61799 33357030 ~ 33361865 (-) True dhrs7
XM_034302705.1 mRNA downstream 78828 33337403 ~ 33344836 (-) True slc38a6
XM_034302075.1 mRNA upstream 25208 33468023 ~ 33484082 (-) False tdrd9
XM_034302071.1 mRNA upstream 25208 33468023 ~ 33484082 (-) True tdrd9
XM_034302762.1 mRNA upstream 42198 33485013 ~ 33505325 (-) False kif15
XM_034302761.1 mRNA upstream 42198 33485013 ~ 33505325 (-) True kif15
XM_034302765.1 mRNA upstream 64279 33507094 ~ 33516686 (-) True tacc3
TU67383 other downstream 78855 33340222 ~ 33344809 (-) False slc38a6
TU67373 other downstream 324092 33019278 ~ 33099572 (-) True G57210
TU67278 other downstream 694923 32715827 ~ 32728741 (-) True G57124
TU66930 other downstream 762102 32653836 ~ 32661562 (-) True slc66a3
XR_004577854.1 other downstream 1034520 32374346 ~ 32389144 (-) False ndufaf1
TU67506 other upstream 12407 33455222 ~ 33462342 (-) True G57322
trnag-gcc_5 other upstream 87112 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67534 other upstream 122721 33565536 ~ 33570218 (-) False LOC113542143

Expression Profile