RNA id: TU67540


Basic Information

Item Value
RNA id TU67540
length 578
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G57354
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33571410 ~ 33572419 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatgttaatgataatgttaatattaatgataatgctaatgttaatgctaatgataatattaatgataatgctaatgctaatgttaatatcaatgataatatcaatgataatgttaatgataatgttaatgctaatgctaatgttaatgttaatgctaatattaatgataattgTAATATCGTAGTGCAGAAACTCACAGAAGGAAAACCATAACTCTTTGTGGTCGCTTTATTGAAGCGTCTCAGCAGGCAGACAGAACAGGACAATGGTGCAGAAACTCACTGCTCTTCTTCACAGCCTTTTATGACTATCCAACCCATAGACAATGCATTACCGCCCCCTACTGGACAAATCTCAATAAACCCTCCTCACGTATCACAGTAATGCTAATGATaatgttaaagaaatgtttgtactgttactaattcatttaatttgtttgttaatgtcatgcctttttctgttcttcatattcacattttatattttgcatttttttcacattatattaaaatcaataaacaaatgTCAGTTTATGaaaactgttaaaataaaaagggTTAAATTCCCGGCATACA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67519 lncRNA downstream 35435 33535478 ~ 33535975 (-) True G57335
TU67393 lncRNA downstream 50533 33480348 ~ 33520877 (-) False mycla
TU67394 lncRNA downstream 50533 33519626 ~ 33520877 (-) False mycla
TU67389 lncRNA downstream 104103 33465699 ~ 33467307 (-) True G57220
TU67500 lncRNA downstream 148936 33421824 ~ 33422474 (-) True G57317
TU67542 lncRNA upstream 2867 33575286 ~ 33576847 (-) True G57356
TU67554 lncRNA upstream 84575 33656994 ~ 33660021 (-) True G57368
TU67557 lncRNA upstream 84575 33656994 ~ 33660021 (-) False G57368
TU67569 lncRNA upstream 128801 33701220 ~ 33762528 (-) True G57379
TU67568 lncRNA upstream 130086 33702505 ~ 33704326 (-) True G57378
XM_026939489.2 mRNA downstream 1174 33562778 ~ 33570236 (-) False LOC113542143
XM_034302922.1 mRNA downstream 1216 33562778 ~ 33570194 (-) False LOC113542143
XM_034302923.1 mRNA downstream 1226 33562778 ~ 33570184 (-) False LOC113542143
XM_026939488.2 mRNA downstream 1227 33562778 ~ 33570183 (-) False LOC113542143
XM_034302921.1 mRNA downstream 1359 33562778 ~ 33570051 (-) True LOC113542143
XM_026939043.2 mRNA upstream 15474 33587893 ~ 33592807 (-) True LOC113541868
XM_026939302.2 mRNA upstream 38038 33610457 ~ 33644218 (-) True si:dkey-157l19.2
XM_026939301.2 mRNA upstream 38038 33610457 ~ 33644217 (-) False si:dkey-157l19.2
XM_034303178.1 mRNA upstream 38038 33610457 ~ 33644168 (-) False si:dkey-157l19.2
XM_034303179.1 mRNA upstream 73339 33645758 ~ 33656870 (-) True lgmn
TU67534 other downstream 1192 33565536 ~ 33570218 (-) False LOC113542143
trnag-gcc_5 other downstream 41413 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67506 other downstream 109068 33455222 ~ 33462342 (-) True G57322
TU67416 other downstream 141641 33423669 ~ 33429769 (-) False lrrc9
TU67383 other downstream 226601 33340222 ~ 33344809 (-) False slc38a6

Expression Profile