RNA id: TU67554


Basic Information

Item Value
RNA id TU67554
length 503
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G57368
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 33656994 ~ 33660021 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACTTTCTCGTCTgcgttttttaaaattacttatttaaattttatacttacttatttaaataatactttgaatttttttattttaatgtcgcTAATGTAGTAATATGATATAGtgttgcgcatgcgcagtgctgATTAAGCGAATCAGGCGggataaataaaaccacatgatCCTACGGTCATGTGAGGGAGCATGCCCCGCCCACAGAGCGAGAGCTGCGCGCTGATTGGTCAGCGTGATTGTCAGTCATTCGGTGTTTTAAAAACAAGCTCGGTGAACTGTATTTTCGCTATTTCGCCACAGCTCAGCCGAGGTGAAGGTGAGAATTCACACGCTGGCGCTTTATCACTAGGTTGACTTAGTGTTTTAAATAGCAGTAATGTTGATTTTTAagtcttatttttattctgagtgaatgggtgtgcgtgcgcgtgcgcgTGCGTTACGTTATTCCATAACAACAGTGCAGGCGGCGTTCTGAGtgaagatggtgatgatgaa

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006396 RNA processing biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67542 lncRNA downstream 80147 33575286 ~ 33576847 (-) True G57356
TU67540 lncRNA downstream 84575 33571410 ~ 33572419 (-) True G57354
TU67519 lncRNA downstream 121019 33535478 ~ 33535975 (-) True G57335
TU67393 lncRNA downstream 136117 33480348 ~ 33520877 (-) False mycla
TU67394 lncRNA downstream 136117 33519626 ~ 33520877 (-) False mycla
TU67569 lncRNA upstream 41199 33701220 ~ 33762528 (-) True G57379
TU67568 lncRNA upstream 42484 33702505 ~ 33704326 (-) True G57378
TU67589 lncRNA upstream 68235 33728256 ~ 33737485 (-) True G57390
XR_004577865.1 lncRNA upstream 101497 33761518 ~ 33763761 (-) True LOC113541873
TU67602 lncRNA upstream 101596 33761617 ~ 33763623 (-) False LOC113541873
XM_034303179.1 mRNA downstream 124 33645758 ~ 33656870 (-) True lgmn
XM_026939302.2 mRNA downstream 12776 33610457 ~ 33644218 (-) True si:dkey-157l19.2
XM_026939301.2 mRNA downstream 12777 33610457 ~ 33644217 (-) False si:dkey-157l19.2
XM_034303178.1 mRNA downstream 12826 33610457 ~ 33644168 (-) False si:dkey-157l19.2
XM_026939043.2 mRNA downstream 64187 33587893 ~ 33592807 (-) True LOC113541868
XM_034302769.1 mRNA upstream 3793 33663814 ~ 33692927 (-) False pcnx1
XM_034302768.1 mRNA upstream 3793 33663814 ~ 33692926 (-) False pcnx1
XM_034302767.1 mRNA upstream 3793 33663814 ~ 33692926 (-) True pcnx1
XM_034303125.1 mRNA upstream 34180 33694201 ~ 33698292 (-) True med6
XM_034302939.1 mRNA upstream 104802 33764823 ~ 33769298 (-) True LOC117596872
TU67534 other downstream 86776 33565536 ~ 33570218 (-) False LOC113542143
trnag-gcc_5 other downstream 126997 33529927 ~ 33529997 (-) True trnag-gcc_5
TU67506 other downstream 194652 33455222 ~ 33462342 (-) True G57322
TU67416 other downstream 227225 33423669 ~ 33429769 (-) False lrrc9
TU67383 other downstream 312185 33340222 ~ 33344809 (-) False slc38a6

Expression Profile