RNA id: XM_026910937.2


Basic Information

Item Value
RNA id XM_026910937.2
length 1370
RNA type mRNA
GC content 0.47
exon number 12
gene id ppa2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 925951 ~ 937449 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCTAACGCATGGAGCCTGAGGGCGGCTGAAGGAGGAGGCGTTCCCGCGGAAGAAGGAGGAACCGAGCGGCCCGGAGCTACAGCTAAAATGATGCGCTCGCTCTTCCGGGAGAGTTTCTCCAAAGCCGCTTTTCACAGAAGAATGTTTCATTACCTGACGGAGGAGAGAGGCCGCCCGAACTCACCTGACTACCGCATTTATTTTAAAACCTCACATGGGAAATACATTTCTCCGTTCCACGACATCCCCCTCTACGCACCTGAGCAACAGGAGAATGACGTCCCAGCGAAGAAACAGAAATGCTCTGACAGTGAGATTCTCTTCAACATGGTCGTGGAGGTTCCTCGCTGGTCGAATGCCAAGATGGAGATAGCCACAAAGGAAGCGCTAAACCCCATTAAACAGGACGTGAAGAAAGGCAAACTGCGATATGTGGCCAACGTTTTCCCACATAAAGGCTACATCTGGAACTACGGCGCTCTGCCGCAGACCTGGGAGGATCCCAATCACACAGATAAAGACACCAACTGCTGTGGAGACAACGACCCCATAGACGTGTGCGACATCGGCACCAGGgtgtgCTCCTCTGGCCAGGTGATCCAGGTGAAGGTGCTCGGGATTCTGGCGCTGATTGATGAAGGAGAGACGGACTGGAAAGTCATCGCCATCAACGCTGACGATCCTGATGCTAATAAACTTCACAGTATTGAGGACGTTCGTGTGAACAGACCCGGTCATCTGGAGGCTACGGTGGATTGgtttagaaaatataaaatacctGACGGGAAACCGGAGAACCAGTTCGCCTTTAATGCACAATTCAAGGACAAGgacTTCGCTGTAGAGGTGATTAAAtccacacacagctgctggaAAGCTCTGGTGCAGAAACAGACGAAATGTGGAGAGATCGTGTGtcaGAACTCGTCGGTGTGTGACAGCCCGTTCCAGTGCAGTGACGCCGACGCCGCCGCAGTCGTCCGAGCTGCTCCAGAGTATGGAGAAGCTTTACCATTTCCTGCAAAAGTGGATAAATGGCATTTCCTGTCCCAGTGATCCTGAACGGTTCGAGCTCCGTCCCAGATCTCACTCAGAACACTGacacatgaatttatttatagagtGGAAATGTGTTCCTGTTTCCCAGAAGAGACACAAATCAGCTTCACTTCATTCGTGATTTAGTATTATTTCATCACCTAAATTATAAATTCACTCTGCATCACTTCAGCgattaatgattcatttttttactaGATTAGCAAACTGAATTTTGTGCCAAAACATTTggtttatattttgaaaaaaaaaagattatttgtaaaattgtatttggtgtaaaaatataatttaaaaatggcatttaCT

Function

GO:

id name namespace
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004427 inorganic diphosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01507 ppa; inorganic pyrophosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46563 lncRNA downstream 425 921127 ~ 925526 (-) True G39312
TU46552 lncRNA downstream 18117 903998 ~ 907834 (-) True G39306
TU46548 lncRNA downstream 18543 901948 ~ 907408 (-) True G39303
TU46549 lncRNA downstream 20080 902120 ~ 905871 (-) True G39304
TU46538 lncRNA downstream 70349 854882 ~ 855602 (-) True G39293
TU46564 lncRNA upstream 16450 953899 ~ 954107 (-) True G39313
TU46590 lncRNA upstream 55509 992958 ~ 993255 (-) True G39323
TU46592 lncRNA upstream 68080 1005529 ~ 1006885 (-) False LOC113524614
TU46618 lncRNA upstream 108794 1046243 ~ 1046753 (-) True G39348
TU46616 lncRNA upstream 146990 1084439 ~ 1085453 (-) True G39346
XM_034302560.1 mRNA downstream 54598 838511 ~ 871353 (-) False cxxc4
XM_034302561.1 mRNA downstream 57913 838511 ~ 868038 (-) True cxxc4
XM_026910954.2 mRNA downstream 170144 746338 ~ 755807 (-) True cdkn2a/b
XM_034302585.1 mRNA downstream 658136 221729 ~ 267815 (-) True LOC117596825
XM_026910944.2 mRNA upstream 67028 1004477 ~ 1007050 (-) True LOC113524614
XM_034301860.1 mRNA upstream 127938 1065387 ~ 1069815 (-) True ints12
XM_026910962.2 mRNA upstream 208680 1146129 ~ 1153350 (-) False anp32b
XM_026910961.2 mRNA upstream 208680 1146129 ~ 1153350 (-) True anp32b
XM_034303177.1 mRNA upstream 332996 1270445 ~ 1369012 (-) True cntln
TU45475 other downstream 610423 314981 ~ 315528 (-) True G38400
TU45455 other downstream 658152 263486 ~ 267799 (-) False LOC117596825
TU45461 other downstream 664800 260769 ~ 261151 (-) False LOC117596825
TU46718 other upstream 333092 1270541 ~ 1280335 (-) False cntln
TU46693 other upstream 348359 1285808 ~ 1289815 (-) False cntln
TU46700 other upstream 355595 1293044 ~ 1301503 (-) False cntln
TU46918 other upstream 934484 1871933 ~ 1877225 (-) False G39603
TU46922 other upstream 934484 1871933 ~ 1877225 (-) False G39603

Expression Profile