RNA id: XM_026911048.2


Basic Information

Item Value
RNA id XM_026911048.2
length 4193
RNA type mRNA
GC content 0.50
exon number 12
gene id si:ch211-113e8.10
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1881330 ~ 1891816 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCTTTTCATGTTATATTCGTTTAAAGCTGCGTTGTATAAAACGGGATATTGCGACACCGCTAGAATCAGTGCTTCCTCCATCTTGGATTCTCTGAAGAGCTCACGCCGTGACGTGTCGATCTTCTATTGGTCTTGACGTGATACGAATTCGCAGGTCAGAGTTCACCAGACTTGAACTTTCAAGCGCGACGAAATGTGAAACTTCTTCGCATGAGCTTGCATTTCCGTTCTCCAGCATTCGCATGCGTGTGAATGGAAGTCAGCGGAACTGAAAAGTGTAGTGTGAGCGCGGcttgagtgtgagtgagagtttGCTTACCGCGGCTTTAATGTAAACGCGGATCCGTGCAGCTGAGTGTCGCTCGTGAGCCTCCGCCGCTCAGCGCGCGCTTAAAGGAGACGCAACAAAGCCAAGATGAGGTCCGAGCCGCCCGGTTCTCGCCTACAGCCCGGTTTACTATCGCTTTAAGAGCAGACTAACACCGTCTCTGCGTCTTTAAAAGATGCTTTTTGCAGAGTTCTAACTAAGTTTGTCAGTTAATCAGAAATACAGAACAGAAAGACGGAGAGAAACCGGGGCTCGAGGAGGACTCGGTGAAACATGTTTGTGTGGAGGATCAGGGCCTTTAACGAGCAAAGTGTTTCAGAATTTTATACCGTATTCATGAGTTCATGTCCGATtggattaattaaaaacaattaaaccGAGGATTGTTGTTTGTTTCGGGGGATGATGGAAGTGCAGCGTGTGGATAAAAAAGAGAAGCGGGAGGAAGAAGACGAGGCCGCGCTCACATCCCCGGACTCGAGTGTGACCCGCACGCCGCGCAGGGCGCTCCGAGGCCGGGCGGCGACTCGAGCGAACTCCGCCGCTCCGCCTGCTTCATCCCCGGACACGAACGGAACCCCGAGTGCGGCGGGATCCGGCCGGGTGCTGCGTGACCGCTCCACGAGATCCGTCCCTGTGTGGAGGAGGAGAGACCTCGGAGTGGAGCAggacgacgacgatgatgatgatgatgatgatgaagaggaggaggaggaagcagAAGCGGAAGCTCGCCGCCGGAGGAAGACAGCGTGTCCGCGGCGCAGGAGGAACGCAGAGGCGGCCAGAGACAGCAAAGCTCCGTGTGGAGAAAGTAAGGACACTGCAGGCACTCGAGGAGCAGCTGGAAGCAGGCGAGCACAGAGCCGCAGCAGAACGCCGGCGTCTCGGGGACTTCGGGGTTCAGCACGGGTCGTGTGTAAGAGCGAACCGGAGACGGAGACCGCCTGCGcggaagaaaataaaacagctgagAAGAAGACAAGCACTGAGAAGAAGAGTGAAGTAAAGGAGGATGAGGTGCTGCTGGGTGAGGAAGATCCTCCCTTCACCGACAACCCGAAAGACAGAACGTACGAGCCTCGGGCCCAGAGTGAGGATGACGAGGGTGTCAGCAGTGACGAAGACGTGCCCTTTAAGGACGACCTGAATGACCAGAGCTACGACCCCAAATctgggagGGAAGGTCAGAAGCCGAGACGCAGAGCTCCTCCACGGctgagagagaagaaggagaaagcagctggaggagagaaagacaagGAGAAAGAGACGGAGGTGAAGACGGAAGGAGTGGAGATGGCGGACGTGAAGCAGGAGGTTGGAGAGGGAGCAGAGCCGCCCAGGAAGAGAGGGCGACGAAGAAAAGACGACAAAAGCCCCCGACTTCCCAAGAGAAGgaAGAAGCCGCCGGTGCAGTACGTGCGCTGTGAGATGGAGGGATGTGGAACGGTTCTCGCTCATCCACGCTAcctgcagcatcacattaaatatcagCACTTAATGAAGAAGAAGTATGTGTGTCCTCACCCGTCCTGCGGCCGTCTCTTCCGCCTTCAGAAACAGTTACTGCGTCACGCCAAACACCACACAGatcagaGGGACTACATCTGTGAGTTCTGCGCACGTGCGTTTAAGAGCTCTCACAATCTCGCTGTGCACCGCATGATACACACTGGAGAGAAACCACTGCAGTGCGAGATCTGCGGCTTCACCTGTCGTCAGAAAGCGTCTCTGAACTGGCACATGAAGAAGCACGACGCAGACGCCTCCTACCAGTTCTCCTGCGCCATCTGCGGCAAGAAGTTCGAGAAGAAGGACAGCGTAGTGGCTCACAAGGCCAAGAGCCACCCGGAGGTCCTGATCGCCGAGGCTCTCGCCGCAAACGCCGGCGCTCTGGTCACCACGGCGACGCCGACCACCACTCATGTGACCCCGGTGGGCGTCGGCCCCGTCATGCTGCTGGAACAGGAGCAGTCGCTGCACACCATGCAGGTGCCCGTCACTCTCGCGCTGCCCTCTACAGACGAGGCTAAGAGTGAAGCggaagtgggcggagcctcGGCGTCACACCCGACTTCTTCCAATCAGACGCTGCATTTTGTCTCCGCCCCCGTGTCCCAGCAACAGCTGTCCGTTCAGGCTTCTCCACAGATCGTTCACATGACCTTCACCACTCTTTCGCACCCGTCTCAGCAGCTCCCCCTGCTGTCCGTCACGCATCAGCTGCCCCCGAGCACTAGCTCCGCCCCTTCCGTCTCACTCCTCCCACAGATCACTTCTGTGGCTTTCACCGCTGATCCTGCACCTCCTCCGTCATCCTCcgcctcctctcctcctcctcctcctcctcaggcTGAGAGGAAAGAGGGCGGGGCACTCTGGGAGGGCGGGACTGGGAATGTGGGTGGGGTTTGGGAAGCGGGCGGGGCCGGCGAGGCGCAGGTTGTGACGGACAGCTCAGACGGGACGATCCAACACAGACTGATGTAGGGAAGGAAGAATTTCACCTCGGAATGAATTTGCAGAGGAAAGACAAGGACACTAGGCACCTCGTGTCGGAATTACACAACAGAGATTACGTTTATCTTCTCAGACATGCAAATTAgccgtttctatagcaacacaCACAACGGACAAGTGGATACACTGAACGTACAATAGCTAGCAGTTAGCAAAGGCGTGTTTTAGCATCTTTGatgggttctttttttttttagatagaaAGTAAATGCTATTGGCTAAAAATGTAAACTACCCAAAACTATTAATGCTCCTCATACGCAGGGAACGACGGGAATATGATCCTCACTGCCTTTAACTGTCGTGACACAAGTTTCTGAGACGTGAAGCTGCGTGTTGCTGTAATTCCGACACGTCCTGAAggtgctcctcctcctcctcctcagtgaACTTCCTCCGAATTTAAACTCTACAGGACTTTAAATCTATCGTGtgtattcaaattcaattttgcTAGGtttgtagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcagaatGTTgtcctgatgtttttttttttttgtacataaacaCTTTTAGTCttcaaactgctttttttttttttggatgtttaatTTTTCACGTGTCCATTTCGGTTTAATGGAGTTAATTTTCGAATCCTTTTTGTaagtttttattctttctttctgtaaatttttttaagtaaatctcCAAACAAGGCATATGATAACCTTATAACAGGCCACTAATAGAATTCTAATAGACATGTAATAATGTTTTCTCTTTAATCGTACACCGTATTGGGACGGGGAGGGGGGTATTTATTAAAGCCACATGTCTCTCTTTACCCACGTATCTTAAAGGAACTGTTTGGCTAAACTGGTAGCTGTACGCTTTCCTTAGTTGTAAGCAGCATTAGCCTTTCATAGCTCTaatgaaaaaggaaacattCTTCATCACTGGAGCAAACCTTAATGTCATAGGAGAAAATATAACAACAGTCTTGACCCTTGATCTTAGTTCCTGTAGATTGAAACTTTTTCCACAATACtaacattttattccttaattagaCAATTACAGAAAGGAACTGTGAACAATAATGAAGGTCACGCAGCGATAAAActgttagatttaaaaaatcatttcatgctacacagttatacaaaaaaaaaagaaagaaagcaggatAGATTTGAACAGGTTCCACGTTTTATAAATCTCTCCGTTTTACTAACCATGTACAATAAACATGTCTACACTCCACTTCCttccgtctctctctgtatgtgtgtaaacaggaagtaaataaTGGCACCCCTCTGCAGTCACTGTGCATCCTGCTAATAAACACTGAAGAAGAAGGA

Function

GO: NA

KEGG:

id description
K25175 ZFP91; E3 ubiquitin-protein ligase ZFP91

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45903 lncRNA upstream 67321 1806634 ~ 1814009 (+) True G38721
TU45890 lncRNA upstream 116977 1763871 ~ 1764353 (+) True G38709
TU45865 lncRNA upstream 360076 1498168 ~ 1521254 (+) True G38687
TU45857 lncRNA upstream 402191 1478557 ~ 1479139 (+) True G38681
TU45851 lncRNA upstream 418252 1462462 ~ 1463078 (+) True G38676
TU45970 lncRNA downstream 30022 1921838 ~ 1975630 (+) True G38758
TU45971 lncRNA downstream 33508 1925324 ~ 1928330 (+) True G38759
TU45967 lncRNA downstream 48164 1939980 ~ 1941750 (+) True G38756
TU45974 lncRNA downstream 50029 1941845 ~ 1966544 (+) True G38761
TU46013 lncRNA downstream 163835 2055651 ~ 2056825 (+) True G38796
XM_026911037.2 mRNA upstream 8342 1864215 ~ 1872988 (+) True LOC113524707
XM_026911055.2 mRNA upstream 20530 1856521 ~ 1860800 (+) True LOC113524724
XM_034302868.1 mRNA upstream 27898 1848225 ~ 1853432 (+) True LOC117596857
XM_026911051.2 mRNA upstream 33917 1822256 ~ 1847413 (+) True dnajb14
XM_034302858.1 mRNA upstream 74779 1784803 ~ 1806551 (+) False psip1a
XM_034302869.1 mRNA downstream 6975 1898791 ~ 1907652 (+) True cntf
XM_034302855.1 mRNA downstream 28346 1920162 ~ 1939926 (+) True si:dkey-117m1.4
XM_034302872.1 mRNA downstream 91831 1983647 ~ 1997265 (+) True cdk2ap2
XM_026932237.2 mRNA downstream 123132 2014948 ~ 2018960 (+) True ing2
XM_026941226.2 mRNA downstream 133672 2025488 ~ 2091343 (+) False stox2a
TU45743 other upstream 712691 1166040 ~ 1168639 (+) False trmo
TU45723 other upstream 751948 1102820 ~ 1129382 (+) False coro2a
TU45707 other upstream 815999 1063972 ~ 1065331 (+) True G38577
TU45582 other upstream 1136346 722127 ~ 744984 (+) False mtap
XR_004577897.1 other upstream 1191827 689114 ~ 689503 (+) True LOC117596906
TU45964 other downstream 91841 1983657 ~ 1997252 (+) False cdk2ap2
TU45993 other downstream 193649 2085465 ~ 2091306 (+) False stox2a
TU45994 other downstream 193649 2085465 ~ 2090841 (+) False stox2a
TU45995 other downstream 193649 2085465 ~ 2091221 (+) False stox2a
XR_004577910.1 other downstream 273807 2165623 ~ 2165784 (+) True LOC113546173

Expression Profile