RNA id: XM_026911051.2


Basic Information

Item Value
RNA id XM_026911051.2
length 1862
RNA type mRNA
GC content 0.50
exon number 8
gene id dnajb14
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1822256 ~ 1847413 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtagggaaaaaaattaacgcgaacttagagagagagagagggggggaaaaaaccaTGGAAGGCAACAGAGACGAAGCGGAAAAATGTATCAATATAGCGACGAAGGCCCTCGAAGCAGGAGACAAGGAAAAAGCGATAAAATTCCTGAACAAAGCGGAGAAATTATTCCCGACTGACAAAGCGAAAGTGTTACTGGAGGCGTTGTTGAAGAACGGAAGTTCGGCCGGTAATGGAGGCGCGTACTACAGAAAGTCAGCGAACGGCACCGAGTCGGCGGCGACGCCTCCACCACAGCAGAACCAGGAATCGGCGAACAGCGACATGTCCAAGAGCTTCACCAAGGAGCAGGTGGAGGGAGTGCAGAGgatAAAGAGGTGTAAGGACTACTACGAGGTCCTGGGGGTCAGTAAGGACGCTAACGAGGAGGATCTGAAGAAAGCCTACAGGAAGCTGGCGCTGAAGTTCCACCCGGATAAAAATCACGCTCCCGGAGCTACAGAGGCTTTTAAAAaGATCGGGAACGCGTACGCGGTGCTGAGTAACGCGGAGAAGAGGAGGCAGTACGATGTGAGCGGAGGAGAAGAGCCCAGCAGCCCGGGACACGGCGGACACGGAGGATTCGAGTTCCACCGAGGCTTCGAGGCCGACATCACGCCTGAGGATCTCTTCAACATGTTCTTCGGAGGCGGCTTTCCCTCCTcgaGTACGTTTGCTAACGGCCGGGATCGATACTCTCAGCAGACGGACCACatgaggagggagagagacgagagaggaGATggaggCTTCTCCATGTTTATTCAGCTGATGCCGATCGTGGTGTTGATCCTGGTGTCTGTTCTCAGTCAGCTGATGGTTTCCACTCCTCCGTACAGCCTCTACTCCAAACCTTCGACAGGTCAGACGATAAAGAGACAGACGGAGAACCTGCACGTGGATTATTACGTCACCCGAGACTTCAAAACGGAGTATAAGGGCTCGGCGCTGCAGAAGATCGAGAAGAGCGTGGAGGAGGATTACGTGTCTAACGTGCGCAACAACTGCTGGAAGGAGCGACAGACGAaaaCGGACCTGCTGTACGCCGCTAAAGTGTACCGAGACGAGCGTCTGCGCAGGAAGGCCGAGCTCATGACCATGGACAACTGTAAAGAGCTGGACAGATTAAACGAGCTGTTTCGCGGTGGATGAGCCTCGCTCTGCACGGACTCTTAGCACATAGATACAAcagaatatatatgtatatgtcacaaatgtaaatgttttttaaggAAAGAAATCAGGACGTTAGGAGAGAAAACACGCCTAAAAAATTAACGTCTAATGTACTGTGAGAGCTCTTTTACTTTGAAACtgttatcatcatcatcctcatcctcatcctcatcctcatcatcatgaCTCCTCGCTGCATACGGCTGAATTCCTGACGCCATTTTACCTCTGAAGAATTCTAACACGCTGAAGGATGACGGACCGAATCCCTAACATTCCTCGTCTCTTCCTACACGCTCCTGACCTCACGTTAGACTTTCTAAAGACTTCTGAAGCTCATCAGGGAGGCGTCGCTCATCTCCCACAATccttagcagcagcagcagctataGTGAGTTGTAAACTTGAAGAAAACACTGTTAGCTCCTTCGCTAGTCCACGCCGAAGCTCCATGATGGTGAACGGTACCGACAGGAAGCGGTTTGAGCTGAGAGTTTCCCCCTGAAGTCACGGTTCTGCTGGATGGACCACCGAGCCATTTTAATCCACGTagctgtacattttatttctgaatgtttGAAGCTATTTAAGGCAAAATATTTCTTCATTGCTCGACTAATCATTTGAATAAAGTTTAAAttattactga

Function

GO: NA

KEGG:

id description
K09520 DNAJB14; DnaJ homolog subfamily B member 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45903 lncRNA upstream 8247 1806634 ~ 1814009 (+) True G38721
TU45767 lncRNA upstream 49479 1287572 ~ 1772777 (+) False G38608
TU45890 lncRNA upstream 57903 1763871 ~ 1764353 (+) True G38709
TU45772 lncRNA upstream 187289 1272968 ~ 1634967 (+) False G38608
TU45865 lncRNA upstream 301002 1498168 ~ 1521254 (+) True G38687
TU45970 lncRNA downstream 74425 1921838 ~ 1975630 (+) True G38758
TU45971 lncRNA downstream 77911 1925324 ~ 1928330 (+) True G38759
TU45967 lncRNA downstream 92567 1939980 ~ 1941750 (+) True G38756
TU45974 lncRNA downstream 94432 1941845 ~ 1966544 (+) True G38761
TU46013 lncRNA downstream 208238 2055651 ~ 2056825 (+) True G38796
XM_034302861.1 mRNA upstream 15705 1784540 ~ 1806551 (+) True psip1a
XM_034302857.1 mRNA upstream 15705 1784668 ~ 1806551 (+) False psip1a
XM_034302860.1 mRNA upstream 15705 1784681 ~ 1806551 (+) False psip1a
XM_034302858.1 mRNA upstream 15705 1784803 ~ 1806551 (+) False psip1a
XM_034302859.1 mRNA upstream 15705 1784926 ~ 1806551 (+) False psip1a
XM_034302868.1 mRNA downstream 812 1848225 ~ 1853432 (+) True LOC117596857
XM_026911055.2 mRNA downstream 9108 1856521 ~ 1860800 (+) True LOC113524724
XM_026911037.2 mRNA downstream 16802 1864215 ~ 1872988 (+) True LOC113524707
XM_026911048.2 mRNA downstream 33917 1881330 ~ 1891816 (+) True si:ch211-113e8.10
XM_034302856.1 mRNA downstream 33918 1881331 ~ 1891816 (+) False si:ch211-113e8.10
TU45743 other upstream 653617 1166040 ~ 1168639 (+) False trmo
TU45723 other upstream 692874 1102820 ~ 1129382 (+) False coro2a
TU45707 other upstream 756925 1063972 ~ 1065331 (+) True G38577
TU45582 other upstream 1077272 722127 ~ 744984 (+) False mtap
XR_004577897.1 other upstream 1132753 689114 ~ 689503 (+) True LOC117596906
TU45964 other downstream 136244 1983657 ~ 1997252 (+) False cdk2ap2
TU45993 other downstream 238052 2085465 ~ 2091306 (+) False stox2a
TU45994 other downstream 238052 2085465 ~ 2090841 (+) False stox2a
TU45995 other downstream 238052 2085465 ~ 2091221 (+) False stox2a
XR_004577910.1 other downstream 318210 2165623 ~ 2165784 (+) True LOC113546173

Expression Profile