RNA id: XM_026911081.2


Basic Information

Item Value
RNA id XM_026911081.2
length 1890
RNA type mRNA
GC content 0.50
exon number 12
gene id pdcd4a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 46540 ~ 64546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGTCACGTGACCTGATAGTGGCGTTATAAACAGAGTGTTTACTTCTCCTCAGCTGCAGAAACAAACCACCCCAAGGCTTTGACAGCAGGCTTTAAATCTGCAGTTAAATGGCAGCGGAGGTGGAGGCGTGGAACTGCGCAGCTCAGCGCGACGGTGTGTTCTCAGTGGGGGCAGATGAGGAGGCGGAGTCAGTGTATGATGAGGAGCTGATTGACAGTGAGGTGAATGGGAACTGGACTCCACAGGAAAAGGCTCTTCATGAGGCCCGGCTCAAAGCAAAGGCTAAACGTCGTCTCAGGAAGTCGTCATCATCACGTGACTCCACCCGCGATTCTCTGTCTGAATGTGTGACCGGGGATGTGCCTGACCCTCACAGCCCTAAAGGAAAAACGCAAACACACGACAGGAAGTCTCGCATGGGAAAAGGACGAGGACTGCCCAAGAAAGGTGGCGCTGGGGGAAAGGGTGTGTGGGGAGCTGCTGGTTTGGTGTACGAGATGGAAGAACCAGACTGTAAAGATCCAAACTATGATGAGTCTGCACAGggggacACAGTATATGCCACAGTGGTTCCTGAGCTGGAAGAAGGAGAGCTGGAGAAGGTCATGAACCCCATCATACAGGAGTACTTTGAACATGGAGACACTAAAGAGGTGGAGATGCTCCTGAAAGACCTGAACCTGGGACCGCGACAGTGTGTGTTCCCATCtctggctgtgtgtttgtctctggaGTGTAAAGCCAGTCAGCGTGAGCTCACGTCCCGCCTGCTGTCTGACCTCATTGCAAAACAAGTCCTGAATGAGGGTGACATGACGACTGCCTtcaaccacacactcacacagctgcCTGAGCTCATCTTGGACACACCTGACGCTCCTCAGATGCTGGGACAGTTTATTGCCCGAGCCATCGCTGACCACGCCCTGCCCATGGACTTCCTGGACCAGTACAAAGGAAAAGTGGACTGTGAGCATGCTCGGGCAGCTCTGGACCGAGCATCAGTCTTGCTGTCCATGAAGCGAGAGACTGTGCGATTGGATAACGTGTGGGGAGTGGGTGGTGGCCAGAGACCTGTCAAACTCCTTATCAAAGAGATGAATCTGCTTTTAAAGGAGTACCTGGTCTCAGGTGAGCTGTTGGAGGCGGAACATTGTCTGCGCGACCTCGAGGTTCCACACTTCCACCACGAACTGGTCTATGAGgcggtgttgatggtgttggagtCTAATGGAGATGCAGCAATTCAGTCGATGGTGATACTGCTGCAGTCATTTTGGAAGTCTGGACTCATCACACTGGACCAGATGAACCGGggcttCCAGCGTGTGTATGATGAGCTCCCGGAGATCAGCCTGGATGTTCCTCATGCTCACTCCATCATGGAGACGTTTGTGGATGTTTGTCATCAGCAGTCTGTCATCACCAAGCAGCTCAGAGATGCCTGCCCCTCCAGCAGGGGGAGAAAGCGGTTTGTGAGTgaaggagatggagggatcatTAAAAGCTGAAGATGGAGCGGAgagaacgaacacacacacacacccacaccaagTTTGAGTTTTAAGTGGTGATGTAAGGATTTAGGCAGAGTTGAATTTGGTCACAGTTAatttgcatgtaaaaaaaaaaaaaaaaaaatgaagcacttAAAGATACACAGCTGTGCTTACATACtaatacattcacacactctcagacacttttttttttttttccccatctgaaGTTATTATTGAGTAATTATTGAGCTTTTACTCAGGCATGTTgcactgtgtgtgggtgtgtatgtgtgcatgcagaGTGAAAGCTTTTTTGGCCTTGGCattaaattcacacattttcacactgtgtattacaaagaaaaaaataaagattttctgcattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU45306 lncRNA downstream 45412 109958 ~ 110173 (+) True G38274
TU45310 lncRNA downstream 47880 112426 ~ 112669 (+) True G38278
TU45311 lncRNA downstream 48219 112765 ~ 113124 (+) True G38279
TU45325 lncRNA downstream 59834 124380 ~ 124637 (+) True G38293
XR_004577591.1 lncRNA downstream 72782 137328 ~ 137848 (+) True LOC117596477
XM_034303144.1 mRNA downstream 66095 130641 ~ 137230 (+) True LOC117596909
XM_034303145.1 mRNA downstream 77806 142352 ~ 153475 (+) True LOC117596910
XM_034303146.1 mRNA downstream 89270 153816 ~ 165514 (+) True LOC117596911
XM_034302586.1 mRNA downstream 136055 200601 ~ 213729 (+) True LOC113524725
XM_034302587.1 mRNA downstream 136055 200601 ~ 213729 (+) False LOC113524725
TU45347 other downstream 137233 201779 ~ 205670 (+) False LOC113524725
TU45362 other downstream 142913 207459 ~ 208898 (+) False LOC113524725
XR_004577897.1 other downstream 624568 689114 ~ 689503 (+) True LOC117596906
TU45582 other downstream 657581 722127 ~ 744984 (+) False mtap
TU45707 other downstream 999426 1063972 ~ 1065331 (+) True G38577

Expression Profile