RNA id: XM_026912184.2


Basic Information

Item Value
RNA id XM_026912184.2
length 2233
RNA type mRNA
GC content 0.49
exon number 13
gene id ccdc149b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1947375 ~ 1964907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGGTGAAGATGCTTACCTGGCGACACGTTTGGGGTTTTTCTACACGCTTGGTGTAATCAAAGAAGCGAAATGGATCCTTCTAGGAGAAGTGAGAGCGACTGGCAAGGGCTAGTGAACGAGTTCCTGGTATGTAAGAGAAAGCTGGAGAGTAAGAAGGAGGCGCTGCTGATTCTGTCCAAAGAGCTGGATACCTGCCAGCAGGAGCGCGACCAGTTTAAACTGATGGCCAATCAGCTGCGAGAGCGCCACCAAGGGCTgaagaaaaaatacagagagCTTATtgATGGTGACCCGACATTACCTCCAGAAAAAAGGACCCAAGTGAATTTAGCGCAGCTGCTGCGTGATGCTCAGGagaagaacaggaagctgagtGATGAACTGAAAGAGCTGAATCAGCGATTAGTAGAGGTTCAAGGTGACAACAAGCTGCTGAGGATGACCATCGCTAAACAGCGTCTCGGTGATGAAGAGGTCGGAGTTCGCCACTTTCCGGCCCACGAGAGAGAAGATCTCGTACTGCAGCTGGAAAAAGCTCGAGAGCAGAACTCGGAGCTGGAGCAGAGCGTGAAGGCGGCGTTGGACGAGCTGCAGGACGTGCGGGCGGAAAGAAACGTGTATCAGGAGAAAGCTCACCGCCTCAACATCGAGCTCAACCACATCCTGAGACGCCACGACGGCCGGATCATGGACGTGGACGCTCTGTGTATGGAGAACAGATACCTCCATGAACGCTTTGTCCAGCTTCAGGAAGAAGTCTCTCTCCTCAAAACCAATTTGATGAAGTACAAGAGTGCACTGGAGAGTAGGAAGAACTGTAAAGTGTATGGCAAGACCAACAGCAGCGCACTAACAGGAGTCCTTTCAGCTAAACAAGttcagGAGCTGCTGCTGTCCGAGGAAAACGGCTGCAGTCTGCCCGTGACGCCGCAGTCCATCAGTGACCTGAAGTCTTTAGCCACAGCGCTGCTGGAGACCATTCACGAGAAGAACATGGTCATCCAGCACCAACGCCAGACCAACAAGATTCTGGGTAACAGAGTAGCGGAACTGGAAGGGAAGCTGAAAGCACTGGAGATGTCTGGACTGTGGAGTTTGCCTGGCCTTACCTATAATGTGTCTGTGGGACTGGGGAGAGGAAGAGATGTGATTATTCTGAGTGAACACCAGCAAGTCCAGCCGTCGGAGGCGCATGCGGTGCAGCTACGGCACGGCTCTGCAGGAGACGAGGAGGTCGTGACCGGAGAGGAAGTGACAGAAGACACGGCTCTCACTGCTGAGGATTTTTCCAGGCCgcgtcatcatcgtcatcatcatcatcatcatcaacatcatcatcatcaccgcCACAGCACAGCGGTCtacttaaaacacacacacacacctgaatccAGCGGACATCTTCCCACAGAAACCACCACCAGCTCACAGAAGAGTTCTGTGGAGAGAGTAACACACAACTACACGCCAGAAACATTACACAGTGATGAAGATCTGGCAACCTGTGACCACGGGAGCACAAGTACAACTCCAGCAGAGGATGCTGGGAAAGAGGGCGGAGCTCCAGTCACATGTTCTGAGGACAGTCCTGATATTCAGGATGgatcagagagagacataagCAACGaggcagtgtgtgatgtggactGTGCAGAACCGTCTGATCCCAGAACAGTGGAGAGTACAGAGAACGTGATGAGAGAGGAAACGGAACCAAACACTCCAGATCAGAGCACGTAGAACGCAGAAACCTTCGAGAAACGCTGCACTTAAACACAGACTCGAAGCTTCTACGCGTTTATAACGGTTTACAATGTTGCCACAGTATCTTTACTAAACATCTGATGTCTCCAAGACAAGAGACGGTGTTCAAACACGAACGTGTTTACGATAAAATCACGCTTTCGTAGCCTTTACAACATCGGAAGtgaattttttgtcttgttaacgtATCTGAGAGAAACGTTGAGATTCTCCTAACAATTCTGTCTCGTATCGACATTACACTGTCACCagctacatgctagctagctagatcgTTAGCTAACAATTTACGCTAGACATTCATATTATCCTGGTTACTTGGCAGCTCTTGATTTTAATAACTTGAACATCGGCTGCGTCGTGTGTTTACCTTCCCGTGCTGAAGACACGAATTTACACAAGAGTAacaacacacttttaaaaaatgtgacgCTTTATCTCAGGTGCATAAACACTACTGAACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46965 lncRNA downstream 5627 1939984 ~ 1941748 (-) False G39624
TU46998 lncRNA upstream 22555 1987462 ~ 1997288 (-) False G39646
TU47000 lncRNA upstream 22555 1987462 ~ 1997288 (-) False G39646
TU47001 lncRNA upstream 22555 1987462 ~ 1988694 (-) False G39646
TU47004 lncRNA upstream 22555 1987462 ~ 1997288 (-) True G39646
TU47008 lncRNA upstream 33592 1998499 ~ 2000262 (-) True LOC117596860
XM_026911038.2 mRNA downstream 52276 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_034302862.1 mRNA downstream 126530 1810150 ~ 1820845 (-) True snapc3
XM_034303177.1 mRNA downstream 578363 1270445 ~ 1369012 (-) True cntln
XM_026910962.2 mRNA downstream 794025 1146129 ~ 1153350 (-) False anp32b
XM_026912183.2 mRNA upstream 4856 1969763 ~ 1979549 (-) True lgi2b
XM_034302863.1 mRNA upstream 36542 2001449 ~ 2007253 (-) True aip
XM_026932538.2 mRNA upstream 43002 2007909 ~ 2011692 (-) True sod3b
XM_026932379.2 mRNA upstream 161911 2126818 ~ 2143166 (-) False irf2a
XM_026932372.2 mRNA upstream 161912 2126819 ~ 2143166 (-) True irf2a
TU46931 other downstream 69792 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 70150 1871933 ~ 1877225 (-) False G39603
TU46922 other downstream 70150 1871933 ~ 1877225 (-) False G39603
TU46930 other downstream 70150 1871933 ~ 1877225 (-) False G39603
TU46700 other downstream 645872 1293044 ~ 1301503 (-) False cntln
TU46993 other upstream 12419 1977326 ~ 1979531 (-) False lgi2b
TU47094 other upstream 208451 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 1067825 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 1068959 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 1069575 3034482 ~ 3034553 (-) True trnah-gug_3

Expression Profile