RNA id: XM_026931992.2


Basic Information

Item Value
RNA id XM_026931992.2
length 2008
RNA type mRNA
GC content 0.47
exon number 10
gene id cep44
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3683443 ~ 3699520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatatattttattaatccgCTGAGGTGATAAAACACAGCGCTGCTGTTGCATAaattaaatgagtttatttaaCGGATTTCCTGGCTAACAGGCTAGTTAGCTAAAGCGTGTTTGGCTCAGGAAGTTTAGCTTTGTGTTCAGCtgagtgaagaagaagaagcagaagaagaagatggctACAGGTGATGTGAAAGGAAGTCTCAGGAAGCTGCAAGCGTCTCTCCGGTCTGTAAAATACCCCAGAGATGTTGATTATCCGGGCTTAGCTAAAGGAGATCCGTCGTGCTGTCTGCCCATCGTGAGCTACGCCTTCACCTCCTTCTCCACCGCTGTGGCTGAACACCTGGTGGAGTTAGGCATCGAGCTCACGGGAAAAAACGACCTGAGCTTCATGGAGTCCGTTTACAAGgtccTGCGTGATCTCTTCAGTTATAAACCCTTGTTGACTAAGCAGCAGTTCCTGCAGTTCGGTTTTGCCGAGAGGAAGATCGCTCTTCTCTGCGACATCATCGGCTTCGTCctggacaaacacaaacagctcaCTAAAGGCACTAAGCCTGTCGGTCAGCTGAGAAGGAGGCAGCTCTCTCGCAGTGACTCCAAATCTGTGGAATATTCACCACCTAGAGAGACCCAGAGGACACCAGGCCAGAAAGTAGTTTCGAGCAGGTCTCTGGTGGAGAGGCACGCGGGTCACCGATCTCCAGCGCACCTCAGCTTCTCCTCAGACGATCAGCAGCTGCACGAGGATCAGGAAGCGGACGAGGAGGGAAGACGGAGATCTCATGACCGAGATGTTCCTCAACCTGCTGCTCACACAgagtgtgtgttggagagcaGATTGAGAGCGGTGGAGGCAgggctgcagcagtgtgtgtgcaagctGGAGCAGCAGCTGAGCATGCTGGACGTCAGAGTGCAGGCGCTGGAGAAGAGCACAGCTGGAAAGATCTGTATAGAGCGCAGTGCGTGGGAGGAGCTGGAGAACCGGGTACTGCTGCTGGAGACGGGACTGACGTTAACGCGGGCACAGGATCCGATGAGAACGGGTGGAGTCGTGAGTGTGGCGATGAGCCAGCACCCTGATGAGACGGCAGATTTGGAGAGGATTAGTAGTTCCACTCTGGCACACCAAACCTCACCAGCCAACCAATTATCATCATCCTCAGAGGATGAAGGACACATCCAGCCTTTTGAAGAATATCGAGCCTACAATATGAGTTTATATGACAGTGTTCATCATCAGGTGTGTTTAACACATCCAAATGAATGTAGAGGCGTAAAGGGAAGGAAAAGCTCTTCAGATGACAAGTCGGGTTAAATTCCTCAtcgctgtatttatttatactgtttaGTGGGCAAGATGTAGTGATGATGTAAGCTGCTTCGTAGTGAATTTCCTTTatgactgttatttttttaagctcAGATGTCCTTTTTTAACGCAGTGTGACTTTGTATTCATGCTGGAACTGCATTTCTCCGTTTCGTGCCTTTTGGCTGAGGTTAAGTGTCATTGAAGTGCCTTGTCCAGTAGATGTCCCTGTAATGCTGTACCTCAGATTAACGTGCCTTTGCTGCCCTCTGTGGTTCATGATGTGCATTACCACGATGTTCTCAGCACAGAGGTAAAAACATGTTGTAttcaatttgtatttttatatcagcCTGGCTTTCAGATCAAGTAAAACCACAGACGTAATGAATGATAGTTTGTGAAagtctgtgtgagtgtttatGTTCAGTTCATGTGTGCGGACGTGAACAAGTAACTCAGTGTTTTCACTATAGACACGCAAATTATACCAAAACTCCCCAGGGGCATTTTCACTACAGAAAGTTGATGTGACTCAAAGCCTATTATTATGTCTTATAATACACATGGTTTAAAGCAAAGCAGTCTTTTTTATGGTACTTTAAATGTATTTGCAGTACTTTACAATCTTCATAGCCATATCAAGGCAAAAAGCCCACATAAGACAAGTCTAAACAGTTTACTGCAGACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47756 lncRNA downstream 9632 3673150 ~ 3673811 (-) True G40316
TU47755 lncRNA downstream 11390 3668847 ~ 3672053 (-) True G40315
TU47710 lncRNA downstream 43063 3639764 ~ 3640380 (-) True G40278
TU47681 lncRNA downstream 100335 3493665 ~ 3583108 (-) False G40250
TU47763 lncRNA upstream 2897 3702221 ~ 3712833 (-) True G40323
TU47974 lncRNA upstream 92905 3792229 ~ 3841160 (-) False G40522
TU47975 lncRNA upstream 111544 3810868 ~ 3841160 (-) True G40522
XR_003404606.2 lncRNA upstream 119727 3819051 ~ 3838182 (-) True LOC113545372
TU47972 lncRNA upstream 139494 3838818 ~ 3840942 (-) True G40521
XM_026938890.2 mRNA downstream 250314 3331968 ~ 3433129 (-) False wdr17
XM_034302841.1 mRNA downstream 250314 3331968 ~ 3433129 (-) True wdr17
XM_026933968.2 mRNA downstream 389564 3288730 ~ 3293879 (-) True spcs3
XM_034302852.1 mRNA downstream 1161945 2220147 ~ 2521498 (-) False tenm3
XM_034302839.1 mRNA upstream 144155 3843479 ~ 3869764 (-) True galnt7
XM_034302840.1 mRNA upstream 144155 3843479 ~ 3869764 (-) False galnt7
XM_026933253.2 mRNA upstream 177866 3877190 ~ 4089517 (-) True galntl6
XM_026933264.2 mRNA upstream 193212 3892536 ~ 4089518 (-) False galntl6
XM_034302098.1 mRNA upstream 193360 3892684 ~ 4089518 (-) False galntl6
trnah-gug_3 other downstream 648890 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 649506 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 650640 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 1509692 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 1703912 1977326 ~ 1979531 (-) False lgi2b
XR_004577883.1 other upstream 846260 4545584 ~ 4609450 (-) False dclk2a
TU48529 other upstream 1504382 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 1525706 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 2057387 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 3462150 7161474 ~ 7204151 (-) False lef1

Expression Profile