RNA id: XM_026932135.2


Basic Information

Item Value
RNA id XM_026932135.2
length 2534
RNA type mRNA
GC content 0.45
exon number 3
gene id oprm1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9244541 ~ 9268345 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagCCCTCCTATCCATTTGTATGTTGTGTTACGCCGATAGGACAGGACGTATTGGCTAAGTGATCAGATAAAGTGGTGCACCGCGGTGTGCGCACGAGGCTCTCGCGCGTTTAGCTCGTTCAAGCAGCACGGACGCCGGCGCGCGCGCTGCTCTGAAGAGCGCATTGAACAGAACAGGTGtcgagaggagagagagagagagagacacacacacacacacacacacagagagagagagagagagagagaggtacacaACGCAACTCGAACCGAGTCCACTGAGAGCCATGGAGAGCGTGGTGAACATCTCAGCGCCTCTCTATCACCTCTCCCATCTGTCCAACCTCAGCGTCTTCTGCCCCAACTTGAGCTCCAGCGGTGGTGGGAACGCGACTCTGCTGGAGAACGGCATGTGTGAGCGACCCACCGACACGAACAAAGGCTCGACCCCCGtcatcatcgccatcatcatcaccgCGCTTTACTCCATCGTGTGTGTGGTGGGGCTGGTGGGCAACGTGCTCGTCATGTATGTGATCATCAGATACACCAAAATGAAGACTGCGACAAACATCTACATCTTTAACTTGGCCCTGGCAGATGCCTTGGCTACCAGTACCCTCCCCTTCCAAAGTGTGAATTATCTCATGGGCACCTGGCCTTTTGGGGACATCCTGTGCAAGATTGTCATGTCGATCGACTATTACAACATGTTTACAAGCATCTTCACGTTGACCACTATGAGTGTAGACCGCTACATTGCCGTGTGCCACCCTGTGAAAGCTTTGGACTTCAGGACGCCCCGCAATGCCAAGATCGTCAAcatctgcaactggatcctgtcGTCTGCTATTGGTCTGCCAGTCATGATCATGGCTTCAACTATTACTACACTCGACTACCACAGCAACGCAGGCATTGTTGACTGCACTCTCGTGTTCCCTCACCCATCCTGGTACTGGGAGAACCTGCTAAAGATCTGTGTTTTCATCTTTGCCTTCATAATGCCTGTGTTGATTATCACGGTGTGCTACGGCCTGATGATCCTGCGCTTGAAGAGTGTCCGCATGCTGTCTGGCTCCAAGGAGAAGGACCGTAACCTGCGACGCATCACGCGCATGGTGCTAGTGGTGGTGGCCGTCTTCATTGTGTGCTGGACCCCCATCCACATCTTTGTGATCATCAAGGCCCTGGTGACCATCCCCAACTCTCTACTGCAGACCATCACCTGGCACTTCTGCATCGCCTTGGGTTACACCAACAGCTGCCTCAACCCGGTGCTCTATGCCTTCCTGGACGAGAACTTCAAGCGCTGTTTCCGTGAGTTCTGCATACCCAGTCCCTCAGTACTGGACCTGCAGAATTCAATGCGATCAACACGTACCCGCAATCCACAGCGGGAGGCTCAGTCAAGTCCCACAGTAGACCGAACCAACCGGCAGGTATGACTAGCAGTCGAGATGTCATCACTGGATTTGCGCTGCCAGCCCAGTGTTGACATCAACTCAGAACTCACACAAGTCACCACAGGTCTCTGAGCTCTGTCGAGGTGGAACTACCGGTCAGCTGTGATGGTCATGGAAATCTCCCATGCCAGTCTAGATTAATTCTAAACAGTACTTTTCATATGCTAACAAAGTAGTATGACTCTTCAGTTTGAATATGTACCACACCACATATTCACTCGAGCTGAATTTAACTTCTTAGAGGTATAGTGTACCAAGAGGAAACCTTACATGAACACAAAGCGTTCCATGAAGTCGGATGACAAGGAGCCTAGAATTGCTTGTGCAAACCATCTGGCATGTTGTCCATTAGACCACTTATATTTTATAGGccaacatacactatataataaacattgcatttgtgctttcctttttctctgacAGTTTGTTTGTCATTGTGTAATAAGAAAAGGACTGAAAAGAAATTGTTTTGTCTTCGTCTCCAGTTTCtttaatgctgtaaatatattgtaaataatattttcctAAACAAGATCAGTGCTTTATATTTGTCAAAATGTGCCATTGGATTGAATTAAATATCATAGatatttataaacatatgtatatatatactgtatatcaaagATTTAAATGGCATGTCACATCCACACATTACCACATGTTACCAAGCAGTATAATATTTaaggtgttgtttttttcagctggTCCACTTGCACTGCAatgtattgttctttttttaaatctatacaGTGATTGTTGTTAGAGTGTTTGTATTTTTACGTTTGTATTTCTCTGAATCAACTGCACAATGTGAACAATTTGTTCTTTAAAATGGCACATATGCAGTTGTCATGCTTCAGTGGTGACAAGTTATGTATGTGATTATGCAAATGTGTTATTTGTCAAATCTGATTTGTAAGATATTAATCAAACTTACATTACTGAGGTCTTGAACTAAAAGATCTTGGACTTTGCTTGCATGACAACATTTTGTGATATGAACAGGTTGTACTTAATgtgatatttagtttttttcatcaaaataaattatttgttgtGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004979 beta-endorphin receptor activity molecular_function

KEGG:

id description
K04215 OPRM1; mu-type opioid receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50882 lncRNA downstream 226905 9016202 ~ 9017636 (-) True G43029
TU50844 lncRNA downstream 383033 8857258 ~ 8861508 (-) True G42994
TU50831 lncRNA downstream 475355 8767988 ~ 8769186 (-) True G42987
TU50814 lncRNA downstream 489645 8754151 ~ 8754896 (-) True G42970
TU50741 lncRNA downstream 693186 8551130 ~ 8551355 (-) True G42914
TU51072 lncRNA upstream 49083 9317428 ~ 9341922 (-) True G43198
TU51168 lncRNA upstream 114363 9382708 ~ 9412002 (-) True G43270
TU51261 lncRNA upstream 248366 9516711 ~ 9517005 (-) True G43352
TU51431 lncRNA upstream 260171 9528516 ~ 9528727 (-) True G43509
TU51505 lncRNA upstream 491131 9759476 ~ 9760212 (-) True G43569
XM_026933661.2 mRNA downstream 15748 9224876 ~ 9228793 (-) False sf3b5
XM_026942296.2 mRNA downstream 95833 9144255 ~ 9148708 (-) True agt
XM_026940775.2 mRNA downstream 115483 9097987 ~ 9129058 (-) True pgbd5
XM_026934827.2 mRNA downstream 291793 8946682 ~ 8952748 (-) True LOC113539201
XM_034303000.1 mRNA downstream 318238 8909505 ~ 8926303 (-) True cabp2a
XM_026944059.2 mRNA upstream 81715 9350060 ~ 9379729 (-) True pcnx2
XM_034303158.1 mRNA upstream 140725 9409070 ~ 9458592 (-) False il22ra2
XM_026945186.2 mRNA upstream 140731 9409076 ~ 9458592 (-) False il22ra2
XM_026945175.2 mRNA upstream 140731 9409076 ~ 9458592 (-) False il22ra2
XM_026945200.2 mRNA upstream 140731 9409076 ~ 9458554 (-) False il22ra2
TU51003 other downstream 15657 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 390747 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 390747 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 460743 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 774112 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 2440269 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2876550 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 3256291 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 3263098 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 3363468 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile