RNA id: XM_026932148.2


Basic Information

Item Value
RNA id XM_026932148.2
length 1675
RNA type mRNA
GC content 0.44
exon number 8
gene id tmx1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12517553 ~ 12522746 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGACTGTCCAAAGCGGAAGTAAGCTAGGAGAAGTAGCGTAAACATGGCGGCTTCAGTGAGCGGCAGAAGGCGAGAAACAAGAACACTTTCGCTACTAAACTCCCTCTCTATTTTGTACCCAGTCGTAGTACTTTGCTGTTTGTCAGTGTTGCCTGTCGCGGCTAAGCGGGACAACCAGCGAGTGATAACGGACGGGAACTGGGAGGAAATCCTGACGGGAGAATGGATGATTGAATTtTATGCTCCATGGTGTCCAGCTTGCCAGCAGCTGCAGTCAGTGTGGAATGAATTTGCAGACTGGAGTGAGGACATTGGGGTCAGCATCGCTAAAGTGGATGTAACTGAGCAGCCTGGATTGAGTGGCAGGTTTATCATCACAGCGCTTCCAACCATATACCACTGTAAAGATGGAGTGTTTCGGCGGTACCAGGGTGCACGCACTAAAGAAGACTTCCTGAGCTTCATTGACGAGAAGAAATGGCAGAACATTGAGCCTGTTTCGTCTTGGTTTGGCCCTTCCTCTTTCATGATGAATATGATGTCTGCTCTCTTTAAGCTATCCATGTTTATCAGGCAATGCCATACCTACCTAACAGAGCAAGTCGGAATTCCAGTCTGGGGTTCTTACATCATTTTTGGCTTAGTAACTCTCTTCTCTGGACTCACCCTAGGACTGgtGCTGGTGTTTTTTGCCGATTTTGTATTTCCCTCACGCCGCTTTTCTTCTTCAGCTTACTATCAGAAGAAGCATGCTATGGAGCAGGCACGCCTTCGGCAGCAGTTGGAGGAAGAGCAGGAAGCTGATggggaagaagaggaggatgaagatgaataTGTTGGGAGTGTGGAGGAGTGGAGCAGAGAAGGTGTGAAAGAGGACACTGTGAGGAGGAGAGCAGTGGGAGGAGGTGAGGAGGAGGACACCTAGAGACCTGGAGAAGCAATGTGAATTACAACGCCAGACCAACCAAATCGCTATGGAAACACACGCCCACGCCAACATGGCAGGCATCCTGATGacatcactgatgatgtcaGAGCTCTTACTGTGTGTTTGCCCTGTATTCCTCCCTTCAGTTCCTCAGTTCCaccttcctttccttttgtgtgagagagaaagaagggaaggactgggagagaaagaagggaGTAGAAGAGTCAGGCAGGGGCCAGGACATAGAAATGTATAAGAATTTTTGTTTATGAAATGAACTTTTTGGCTTTTTATTGCCTGCCTATCTTTCAGCTGAACTAATACTTACCCACTTGAGCAGAGATGACCAttggagaataaaaaaaactgtacatgtttggatttttttttttgctgcattgttaatattttattcaatagTTTTTATGTGAGATACTTATTTGAGTTTTTCATATCTGAAATTTGTTAGTATTGCATTCACAttagctttttttgttgttctttaagGATAACATTTTGCCAGATATGTTATCTATTTTTGCTTCCAGAGAAGTTTTATGTGATGACTGCCTTGAGACCAGCTGATTGAATAGAATGGAACTAAGGTAACTGTGCGATGAACAGTACCtcagtgtagaggtgtgtgatGGTTGATCAGCTAAAGCATTAGTGTTCTATTCTCCAGGAAAGATCCCATGCTGTAGTATAACTGTCCAAATAAAGTTGACTGTTTCCCTGA

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404309.2 lncRNA upstream 18534 12489514 ~ 12499019 (+) True LOC113542444
TU53152 lncRNA upstream 201683 12315533 ~ 12315870 (+) True G45040
TU53074 lncRNA upstream 359325 12156248 ~ 12158228 (+) True G44972
TU53076 lncRNA upstream 361431 12154384 ~ 12156122 (+) True G44974
TU53072 lncRNA upstream 373151 12144117 ~ 12144402 (+) True G44970
XR_004577794.1 lncRNA downstream 116571 12639317 ~ 12643304 (+) True LOC117596823
TU53285 lncRNA downstream 125149 12647895 ~ 12648406 (+) True G45153
TU53325 lncRNA downstream 151662 12674408 ~ 12674623 (+) True G45170
XR_004577841.1 lncRNA downstream 210686 12733432 ~ 12739226 (+) True LOC117596851
TU53595 lncRNA downstream 288173 12810919 ~ 12811250 (+) True G45351
XM_026944217.2 mRNA upstream 98605 12403949 ~ 12418948 (+) True atl1
XM_026936991.2 mRNA upstream 176561 12330050 ~ 12340992 (+) True dmac2l
XM_026937000.2 mRNA upstream 176561 12333000 ~ 12340992 (+) False dmac2l
XM_034302796.1 mRNA upstream 176561 12333063 ~ 12340992 (+) False dmac2l
XM_034302795.1 mRNA upstream 176561 12333192 ~ 12340992 (+) False dmac2l
XM_026943052.2 mRNA downstream 51241 12573987 ~ 12594144 (+) True frmd6
XM_026944537.2 mRNA downstream 78332 12601078 ~ 12603749 (+) True LOC113545271
XM_026944249.2 mRNA downstream 84783 12607529 ~ 12609839 (+) True LOC113545096
XM_034303040.1 mRNA downstream 90296 12613042 ~ 12615207 (+) True LOC117596891
XM_026938485.2 mRNA downstream 179704 12702450 ~ 12712789 (+) True abcb10
XR_004577785.1 other upstream 751139 11745749 ~ 11766414 (+) False LOC113544122
XR_003404598.2 other upstream 790781 11682864 ~ 11726772 (+) False LOC113545306
trnag-gcc other upstream 810548 11706935 ~ 11707005 (+) True trnag-gcc
trnag-ccc other upstream 926148 11591335 ~ 11591405 (+) True trnag-ccc
XR_004577793.1 other upstream 1346439 11099593 ~ 11171114 (+) False dntt
trnay-gua other downstream 113574 12636320 ~ 12636406 (+) True trnay-gua
TU53286 other downstream 117090 12639836 ~ 12643195 (+) False LOC117596823
trnat-ugu other downstream 145068 12667814 ~ 12667886 (+) True trnat-ugu
XR_004577802.1 other downstream 406813 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other downstream 406813 12929559 ~ 12936802 (+) False spef1

Expression Profile