RNA id: XM_026932173.2



Basic Information


Item Value
RNA id XM_026932173.2
length 7480
RNA type mRNA
GC content 0.51
exon number 33
gene id LOC113537600
representative True

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 14520938 ~ 14595086 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CGTGCGGAGGATGCGCGCGCCCGAGGGGCTGCGGTCCCATTGACTGTTCCGTCTCCCTGACAGCGGCGGCATCGGCGGCACTCGCGCCTCAGCCAACCTAGAGAGCCGCGCGGATTCGACGCCTCACCCTCAGCCCGGCATCAGCATCATCTCGAGCCGGACAAGAAAGACAACGATCCCGTTATCGAGTAGCATCCTCCGGAGGAGATATGGGCTACCGATAACTGGAAAGAGGGGGTAGAGGCGGGAGGGCGGGCAGAGGGTGGTGGGAGACCGAGAGGAGAGAATAAACTGTTATAGGAAGGGAAGAACCAACGGCGGCCGCCCCGCCACCATGAAAGGGTTGCAACGCTTGCATGAGCCGCCGATGCACCCGTGGACCATGTCGTGATTCTTGGGCTTTAGCAGCTTTCGCAACGGAAACACGAGTCCGCCAAGGAACGGGGAAAACATGTCGGCCTCGGTGGGGCCCCGCGGCGGCCCTCGCCCACCCACTGCGCCGCCCTCGATGCCCGAGCTGCCGGACCTCAGCCACCTcacagaggaggagaggaagattATCATGGCTGTGATGGTTCGGCAACGGGAGGAGGAGGCCAAGGAGCAGCAGGCCATGTTCAAAGAGGAGAAGCCCATACAAGCGAAAACAGTGAACCTGGTTGGGAACAAGAAACCTCCACAGCAGAATGACATCAGtATGCACCAGCAGTTTGCCAGCTATAAGGAGCAGGTGCGACGGATAGCGCAGGAGCCTCAGCAGAGGCAGCAGGGCCAGCACAAGGATGATGCACCGACCTGTGGCATTTGCCACAAGACCAAGTTTGCCGATGGCTGTGGGAACCTCTGTTCCTACTGCCAGACCAAGTTCTGTGCTCGCTGTGGAGGAAGGGTCTCTCTGCGCTCCAACAGTAAGAAGGAAGATAAGGTGATGTGGGTATGTAACAAGTGCCGTAAGCAGCAGGACATCCTCACTAATTCAGGGGAATGGTTTGCGGAACAGGGGCCAAAGGTGACGCCAGCGGCCCTGGAGAAAGCAGTGAGTGAGCCAGCCACGAGTGCAGATCCTGCAGGAGACAAGAAAGTGCGCTCTAGGTCTCAGATTCCTCTTGGTTCCTCTGCCTCCACTGCCCAGGACAGCCAGCTgcccacaaacacaaacaaaggaCCTGTTGCTGGACAGGCCGACATGCCTTCATCCCGATCCCGCAGTGAACCACCACGAGAAAGGAAAAAGCAACCGTCAACCTCAGATCAGAACGGCAAGCCTGGACCAAGAGCGGAGAGGCGCCGGGGATTGCCCAAACTACAGTCACAACCTTCACAGGAGTGGGAGGCTGGGGACGCTCGTCAGGAGATTCGCCGTCTGGTTAAGGCCCGATCACAGGAGCGGAGCTATGCTGAACTGGATGGAAGTGTGGGGGAGCTGAGAAGGACAGAGGGTGAGCAGAGGCCACCTCGAGAGGAACAGCGAAATGAGGTTAACTCTCCACACCATCCTGTCAAGGCCCAGCCGACGGAGCAGGAGAAACGTGTGCATCCAAAAGCACCACGGCTCAGACAGGCTGAGACAGGCATGCCTGAGAGGCAAGCTGGCGAGGCAGTCACAGAGAGTAGAACAGGCCGGAGGTGGGCAGAGGAGCATCAACCATCTCTGGAGAGCAAGCAGCAAGGAGTTATGGGGGAGAGGACCGTGGGGGGCACAACAGGATCTGCGGTGCAAGCTCCTAAACCTAACCATGCCCCTCAGCCGCCTGCCCCAGGGTTCCGTGTGGGTCCTGCTGCTCCCACCGGAACCCCTGAACTCAGGGAGGCCTCCTGAAAGAGACAGGAAGCTTCAGCCAGCCACCTGGAGCCAGGCTCGGCTGGTGTGGCGCGTAAGACCAAGCGGGAAAAAGCTGAGAGCATGCTGCGTAATGACTCCCTCAgctccgaccaatcagaatgcctGCGGCCTCCCCCACCCCGTCCCTACAAGTCAAAGCGTGGAGGGAACAAGCGGCAAATGTCAGTCAGTAGCTCTGAGGAGGAAGGCGGCTCCACGCCTGAGTACACTAGCTGTGAGGATGGAGAGATCGAGAGCGTCAGTGAGAGAGGGGACTGGGAGTGCTATCCTCTGGATCCCACGGTGTGGCATCATCCAGTTACGTGGCAGCCCTCCAAGGAAGGTGATCATTTAATCGGCCGAATTACCCTGAGCAAGCGCACGGCCATGCCCAAAGAGTCTGGAGCACTACTGGGGCTAAAGGTGGTAGGGGGGAAGATCACAGAAACAGGGAGACTCGGGGCCTTTATCACCAAAGTTAAAAAAGGAAGCCTGGCGGACGTGGTGGGCCATTTACGGGCAGGAGATGAGGTGCTACAGTGGAATGGTAAATCATTGCCTGGATTAACCACGAAGGAGGTTTACAATATTATCTTGGATTCACAAACAGAACCCCAAGTTGAGTTAGTCGTTTCAAGGCCCATCGGtgataTACCCAGAATACCAGAAACCTCACACCCTCCATTAGAATCTACAGGCTCAAGTTCCTTTGAATCTCAGAAGATGGAGCGGCCATCTATATCCGTCATGTCCCCTTCCAGTCCCAGTGGTCTGAGAGACGCTCCTCAGctgctccctggacaactctcgGTGAAAATGTGGTATGATAAAGTTGGCCATCAGTTGATCGTGAACGTGCTGCAGGCCAAAGACCTGCCCCCCAGACTGGATGGACGACCCAGGAACCCTTACGTCAAAATGTACTTTCTTCCTGATAGAAGTGATAAAAGCAAACGAAGAACGAAAACAGTCAAAAAGAGTTTGGAGCCCAAGTGGAACCAGACGTTTGTGTACTCGCATGTGCACCGGCGGGACTTCAGAGAGCACATGCTGGAAATCACAGTGTGGGACCAACCGAAAGTTCAGGATGAGGAAAGCAGTTTCTTGGGAGAGATTCTGATTGAGCTGGAGACTGCTCTGCTGGACGATAAGCCTCACTGGTACAAGCTGCAGACTCATGATGTGTCCTCTATTCCACTGCCTCACCCCTCACCGTACCTCCCCCgaagacacacccacagtgaCACACCCACTAAAAAACTGCAGCGCTCTCAGCGCATCACAGAATCAGATTATGATGATGGTATTGGCGTAGTGGCTGCAGCAGCAGAAAGTCGAccaagagaaaaggagagggaACGAgggcgagagagggagagggaaagagagagggagagagagcggaCTACACTGGAGGTTCCTGAGCAGCAGAGGTCGACACATCATCGCTCTCGCTCAGTATCACCTCACAGGGAATCAGAGAGCAGGGCAAGATCACGGCCCGCAAATGTCCCCATGCAGAGgAGTTTGGATGAGGCACAACATAGCCGCAGGTCTCGTTCACCAACCCGTTACCATGAGCATGGTCGTGTACAGGAGAGAGAATATGTGGATGACAGTGAAGTCATCTTGGTACACAGATCAGTGTGGGGTAGGAGCGCAGAGTGTCTGCACATCACAAgTGATCTGCAGCCCCCTCTTGACAGGGTTAGAAGTGCTAGTACCAACTGTCTGAGGCCAGATTCAAATTCCAATTCACCCGATCGAGAAAGGAGCACGCAGTCTCTCCCCCGCATCAGACCCACCAGCCCCAGGATCCTAATCCAACACGCCTCCCCTGAGGATGACAGCTGGATTTTGGAGCCTATTTTTCCTACTCAGGAGACAGTAAACCACCTCAGTGCAAGGCCCGGGGCACAGAGGCAGCCACGAATTCTGGACAAGCCTAGCTGTCAGAAACCTGGCAAGAAAAAATCTGACAGTGAGCGGGTTCATCCACATGCCAGCACGGCATACTCTTCATCGGCAGGAACTTCCTCATCAGCACGCAGAGGCCGACAGTTACCCCAAGTCCCGGCTAAAAGCAGTAGTGTAGAACAAGCCCTTGCTTCAGAGGAGCGAACACGGCAGATGAAGGTACATTCCTACAGGACACCAGCTCCCTCCAGTACCAGCCAGGACCTGGAGAGGGTGCTCAAGAACAAACGAGAGCTTTATAAAGAGCAGCGACGGAGCTGTGATAATGTATCCCATAAATCCTCAGACAGTGATGTCAGTGACGTGTCAGCCATCTCTCGTGCCAGCAGTGCCTCACGGATCAGTAGCACCAGCTACATGTCCATCCAATCAGAGCGGCCCAGGGGTCGCTTCAGCTGCCATGTTCGCCCATCCAGCCGGAGCATGTTGAAGAGCACGAGTGTGAGCGGTGAAATCTTCACTCTGGAGCGCACAGACGGCAGCCAGTCAGACACGGCTCTGGGAACACTGGGGACAGGAGGGAAGAAGCGGCGCTCCAGTCTTAGCGCTCGTGTGGTGGCCATCGTGGGTATTCCCTCACGACGCAGTAGGAGCACCTCTCAGCTCAGCCAAACAGAAGCAGCAAATAAGAAGGCAAAAGGCTCGAGTCAGATCCAGAGGAGTCAGGAGACAGGCATGGCAGTGGAGTATCCCCGCAATGCAATGGCTCGCCAGGCCAGTCGCGAGTCCACTGATGGCAGCATGAACAGCTACAGCTCTGAGGGGAAtcTGATCTTCTCAGGGATGAGGTTGGGGGCTGACAGCCAGTTCAGTGACTTCCTTGATGGCCTTGGACCTGCACAGCTAGTGGGGAGGCAGACTCTAGCAACACCGTCTATGGGAGATGTTCAGATCGGcttaatggataaaaaggggCAGTTGGAGGTAGAGGTGATCAGGGCACGTGGCCTTACCCCCAAACCAGGATCCAAATCGCTGCCAGCTCCGTATGTCAAGGTCTACTTGCTGGATAATGGAGCATGCAAAGCCAAAAAGAAAACCAAGATTGCACGAAAAACACTCGACCCATTGTATCAGCAGTCACTGCTGTTTGAGGAGAGTCCGCAGGGTAAAGTTCTGCAGGTAATAGTGTGGGGCGACTATGGACGCATGGACCACAAATGCTTCATGGGAGTTGCACAGATCCTTTTAGAAGAGCTGGACCTTTCTAGTACAGTGATTGGCTGGTATAAACTGTTTCCCCCATCCTCACTGGTGGACCCAACACTAGCTCCTCTCACTCGACGTGCTTCCCAGTCATCACTCGATTCAGGGCCAACAGGCGTCAGGTCCTAGTGAACAGGAGAGAGGACATGAGATAAAACATGCCCGAATAGAGCAAAGGCCCATGGCAAAAAATACAGCGCCAGAGGGGCAGCCAGGCAGGCGGACAGAATCACGATCAAAGCTTTGCTGGAGCCTGACAATCACTTCTCCTCTCGTTTATTTTTGGCCTTTGGATTGCTGAGATTTCCCTTGATCCACTCCGCTCCTTACTGcatgttctgtttgttttagcCATGTTGCTGAGATGATGAGCGAGCCCAAATTAAAAGAGGGAATGATGAGCAGCTGAAAGCAATCCGCTTTggctgacagagagagagaggagccgACTGCGGTGCTGGTTGCCTGAGTGCTTCTTGCCAATCAGTAACGTTTAGGAGCTGTTTTCTAACCATataaggagtgtgtgagagtatgcGAGACAGAGGTGTGACGGTGGATCGGTGAGAGTGAAGACAACGCTGCCCCTCCCTTGGCCTAATTGTACAGGAAGCCTGTCTGCCGAGGAGAGGCCTGAGGTCAGGGGTTAAAGGGCAAGGGTTAGTCTTCTCAAAGTCTCCCCTCCTCCTCACGAATGCTGAGTGCAGGGCCTCTCCTCATGTCAGTGTGCCACTGACTCAGAtcaggtgtgtgagaggggaGGCCAGCTTGAAAACCTTTGTCTGTTTACAGCAGTTACAACTGActgctttgccttttttttactttctcatGTATTtgatacacagacacaccttGTAGAATGTGAACACATGGCTCATTCTGACAGTTGTGTCGTATAAGCTTAAAGGAAGATGCAAAACCACATGCAGtagaacactgggagtgaggttTATTTCAGCCTGGCCAGGAGATTATAAGAATGGCCAACTGACGTAAATACACTAATACATTTGGCGTCCCAGGTTAGTGGCCCTCAGATATACTTTGAGCTCTTGAGAGTATATAGAGAACTGGTCAGTATGGACAGGCACCGTGCACATAGGTAATAGCCAGTCACTTTATTTGACTTAGTTCATTCTGTTTTTGGGACCTGCCCATAACTGAATTTCTATCCAAGTAAAGTTATTTTGAAGCAAGCACaaatgcttgattttttttaaaacaaacttttaaagaAGATTATAACAACCCAAATTATCATCAgctatttttgcattttttattttgtggtagtttaagttattaaaaaaaaattaattaataaagaaatcaagTCTTTCCCGAGCATCTGGACGAATGTGATAGTAAGTGAGAGGTGGTTTAGGAGATGGCCTGAGATGGTGACCTCCCAAAACCTGCCACCTTCTCTTCCCAACATGGGCAACAGCATGACTCTGGAACCGTTCCAAGCTGCATGCACATTTTGTAAAACAAGACagatgagaaaaaagagactaaaataaatgtgtgttagtTCCACATACTGTAGGCCAGCTTGTATGTTGCATGTACTTGTACAGTTTGCTCGTACTTGATATTAATAGATTAACCAATAAAATGAAGCCATTCATTCCATGTGTGGGCATTTGGCCAAGTTTAGCCATGCACACAGCCCTCATTTTGGGGCAGAATGTCTATGAGGAGTTTttgaattgttttctttttttttttaccctatGGATAAATAAGTTCTGTACTGTAGTACTGAGCAAACACGAGGCCCTCATTTTTACTGAAGATGTTGGTGTTCTCTGTAGTCTACTACTGTGGGCTAGAACTGAGCTAGATAATGTGTATAAAACCAGAGCTATCTATATATGGAAAATGATTATGatatatgaaaattaaaacagcatatatatatatatttatatatacatatatatatatatatatatatatatttaaaaaaaaatagtgtatcCAAGTAAATGttgcaaacagaaacaacactgcacatactgtaaatatgagTCTGCTTTTGAGGTTTACTTATATTTACAAAGTGGCCCCGTCAAAATAGATTAATGCTCTGTCTCCTGGCTCCATTGAATGGAACAAAGGCTGAGAAAGGACACCACCAGAGTTTCTGGTTCTTTCAGATATATGTGGCTATAAAATAATCACTATAATTGGGACCTCTGTTTATCTGTTACAGCATTAGAACAAAGTCCATGAGATCCTGTTTTGATAAAAAAGTTTACTTTTCATGTCCGTTATGGCAGACTTCTTTCCTTTGTCAGTATTACTCAAGGATACTGATTGTTTACAATTCATGTGTCCCACTGAAACAGAATAGAAAGTATTCACTGCAACATTTCTTGTTTGTACAACAGATGTTACTCaaatgatgtgtatgttttatattcaagagttcatttttattatttacaaataaaagacTGTGTGGAA

Function


GO: NA

KEGG:

id description
K15291 RIMS1, RIM1; regulating synaptic membrane exocytosis protein 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54707 lncRNA downstream 229305 14289556 ~ 14291633 (-) True G46304
TU54560 lncRNA downstream 336852 14183768 ~ 14184086 (-) True G46183
XR_003404420.2 lncRNA downstream 879414 13632755 ~ 13641524 (-) True LOC113543535
TU54100 lncRNA downstream 1056199 13464496 ~ 13464739 (-) True G45755
TU54091 lncRNA downstream 1090039 13430365 ~ 13430899 (-) False csgalnact2
TU55041 lncRNA upstream 18455 14613541 ~ 14613818 (-) True G46590
TU55042 lncRNA upstream 19430 14614516 ~ 14614764 (-) True G46591
TU55026 lncRNA upstream 22567 14617653 ~ 14625970 (-) True G46576
TU55183 lncRNA upstream 342010 14937096 ~ 14937309 (-) True G46680
TU55218 lncRNA upstream 417161 15012247 ~ 15012450 (-) True G46711
XM_026939778.2 mRNA downstream 6052 14388987 ~ 14514886 (-) False kcnq5a
XM_026939770.2 mRNA downstream 6053 14388987 ~ 14514885 (-) False kcnq5a
XM_034302935.1 mRNA downstream 6053 14388987 ~ 14514885 (-) False kcnq5a
XM_026939788.2 mRNA downstream 6053 14388987 ~ 14514885 (-) False kcnq5a
XM_026939760.2 mRNA downstream 6053 14388987 ~ 14514885 (-) True kcnq5a
XM_026942525.2 mRNA upstream 35809 14630895 ~ 14642737 (-) False ogfrl1
XM_026942516.2 mRNA upstream 35809 14630895 ~ 14642735 (-) True ogfrl1
XM_026936856.2 mRNA upstream 77995 14673081 ~ 14778488 (-) False smap1
XM_026936847.2 mRNA upstream 77995 14673081 ~ 14778488 (-) False smap1
XM_026936837.2 mRNA upstream 77995 14673081 ~ 14778488 (-) False smap1
XR_004577668.1 other downstream 328695 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 1489742 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 1786656 12734200 ~ 12734282 (-) True trnal-cag
trnae-cuc_9 other downstream 1852047 12668820 ~ 12668891 (-) True trnae-cuc_9
trnak-cuu_2 other downstream 1852373 12668493 ~ 12668565 (-) True trnak-cuu_2
TU55100 other upstream 184779 14779865 ~ 14784734 (-) False sdhaf4
TU55523 other upstream 818855 15413941 ~ 15416483 (-) False c3h10orf53
XR_004577773.1 other upstream 2384045 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 2384045 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 2384045 16979131 ~ 16982729 (-) False morn4

Expression Profile