RNA id: XM_026932247.2


Basic Information

Item Value
RNA id XM_026932247.2
length 2521
RNA type mRNA
GC content 0.43
exon number 10
gene id gabra2a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20327905 ~ 20343502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGCGTGGTTCTCGAGCGCGAGCACTGAGCGCTGTGCACACTTCCCGCTCCCGCGCGCGGCGCTTGCTTACAGGTGGGCTCTGTGCTGAAGCTGGAGGACGCGCGAGCTGGTTTGGGGATTGAAAACAACTACACTAACCTGGAGGAAAGACTTTACAGCTGTGATACAGTTGCATCCGCGCGCACATCTTCCCTCATCAGATTCTCCTGGGCAGAAGCGAGGAGACACACTCCTCAGTCCTCGGCAGGGCTTGTTGAGAAATGAATGGACGATATTTTCGCTTCTATGGATTCTTGATCTACCTGATGTTAAATGGAGTCTGGCAGACAAGGTCAAAATCAGATGTGTCTGGTTCAGAGGCTTTCAAAAacaacatcacactttttacaAGAATCCTGGACCGACTTTTGGATGGCTATGATAACAGGCTGAGACCAGGTCTTGGAGATCGAGTGACTGAGGTAAAGACTGATATTTACGTGACCAGTTTTGGGCCAGTATCAGATGCAGACatgGAGTACACAGTGGATGTGTTCTTCCGTCAGCGCTGGACAGATGAGCGACTGAAGTTCCACGGGCCAATGAACATCCTGCGGCTCAATAATCTGATGGCCAGTAAGATCTGGACCCCCGACACCTTCTTCCACAATGGCAAGAAGTCTGTGGCGCACAACATGACCATGCCAAACAAATTACTGCGGATCATGGAGAATGGGACACTACTTTACACCATGAGGCTGACAGTGCAGGCAGAATGTCCAATGCATTTGGAGGACTTCCCCATGGACTCTCATTCATGTCCACTGAAATTTGGCAGCTATGCATATACTCTGACAGAGGTGACCTATGTTTGGACAAGAAATGCCACGCTTTCAGTGGAGGTGGCTCCAGATGGATCAAGGTTAAACCAGTATGACTTGAGGGGCCAAACTGTTGGCAAAGAAACCATTAAATCCAGTACTGGGGAATATACAGTGATGACAGTTCATTTCCATCTGAAGAGGAAGATTGGATATTTTGTGATCCAAACTTACTTGCCCTGCATCATGACTGTCATTCTGTCCCAGGTTTCCTTCTGGCTTAACCGTGAATCAGTACCTGCTCGAACAGTTTTTGGTGTGACTACAGTGCTCACAATGACCACTCTGAGTATCAGTGCTCGTAACTCGTTGCCCAAAGTGGCCTATGCCACTGCGATGGACTGGTTCATTGCTGTGTGCTATGCCTTTGTCTTCTCTGCCCTCATTGAGTTTGCGACAGTCAACTACTTCACCAAACGGGGCTGGGCCTGGGATGGCAAGAGCATTCTCAACGACAAGAAAAATGAGGGCTCTGTTATGAAGAAGAACAACGCTTATGCAGTCGCTGTGGCAAATTATGCTCCCCACATCAGTAAGGATTCAGCTTTGCCCACTGTTTCCAAGAGTGCTCCATCAGAGCCCGCTAAAGCTCAGCCTGTGGCAAAAGAGAGCAAGAAGACCTTTAACAGCGTAAGCAAGATCGACCGCATGTCCCGCATCATCTTCCCTGTGCTTTTTGGCAGCTTCAACCTGGTCTATTGGGCTACATATCTCAACAGAGAGCCTGTCATTAAGAACATGGTTCCCTCTCACTGACCATtccattaaatatgaatatacacatcacccccacatacacacataaacagacatacacattaaaatattgctTAGCTTTTGTACCTGTTTAGTACTGTGTTACGctttgcatttttgtcttactatTAAGAGTTTATACCATGTCCTTCATCTTTAAAACCACTTTCACTGCCAGGCCAATCTTCAGAATGATAACATGCCTTTTTTATTTGGTAAGGACTGTTGGtaaaaattaaaactttatttatttttattttatcagacAACGATAAAGCATTTTTCTCACAAGATTCaatattttcacttaatttttaattgTACTTGTTTCCTTCCAATGTAATCTTAATTTTTAATTGTACCTGTTTCCTTCCAATGTaatattcttcttattatataTAGATACTATCTTGCCTCTTACATAATTGTGCCAATTTGGGAAGAGCAGGTAAAATATAGGGATTTTTCCCccccctttttccttttttaaatacatgcaGTACAGTATGAGATGGTAGGATGAGAATGCTTAAGTTCTCATTCAATTGCCTAAATGTTGTTAGGAGGAAGGAAGAAGCCTGCCATCCTTTCCTCAGTAAAAGCACTGCCGATTATATCCTTAAGTGCCAAGGATGGCACATGGCACAGCTGGGATATTAATATTAGATGTAGTTTGTGCAGTCATTCTTAGAATAATTTCTCTTTCCCTTACTTGAATGTGAccttaaaaagaaaacagctcaGCACTCTGTCTGGGCCTGTGCCACTTAGATGCACTTAATGCAAATAACGTAGttcaaatgtttttcaaatgAACTTACACTTCCATTATACATTTTAAGATAGATACAATTATGAACAAGTATTTTCAGCCAGATGTCTATCTTTTTCTAATGTCAAAA

Function

GO: NA

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58849 lncRNA downstream 100326 20224966 ~ 20227579 (-) False atp10d
TU58804 lncRNA downstream 111475 20215653 ~ 20216430 (-) True G49700
TU58755 lncRNA downstream 122312 20182053 ~ 20205593 (-) False metap1
TU58757 lncRNA downstream 143616 20181078 ~ 20184289 (-) True G49661
TU58688 lncRNA downstream 263394 20064256 ~ 20064511 (-) True G49605
XR_003403784.2 lncRNA upstream 5908 20349410 ~ 20351476 (-) True LOC113537651
TU58937 lncRNA upstream 120391 20463893 ~ 20464950 (-) True G49806
TU58979 lncRNA upstream 128975 20472477 ~ 20473295 (-) True G49836
TU58984 lncRNA upstream 134206 20477708 ~ 20478688 (-) True G49841
TU59102 lncRNA upstream 156031 20499533 ~ 20500791 (-) True G49941
XM_026936680.2 mRNA downstream 10736 20309844 ~ 20317169 (-) True gabrg1
XM_026936659.2 mRNA downstream 48863 20262035 ~ 20279042 (-) False gabrb1
XM_026941752.2 mRNA upstream 14468 20357970 ~ 20369445 (-) True gng2
XM_026941743.2 mRNA upstream 14468 20357970 ~ 20369112 (-) False gng2
XM_026940791.2 mRNA upstream 84369 20427871 ~ 20442232 (-) False trim8a
XM_026940782.2 mRNA upstream 84369 20427871 ~ 20442232 (-) False trim8a
XM_034302970.1 mRNA upstream 84369 20427871 ~ 20442232 (-) True trim8a
XR_004577815.1 other downstream 660244 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 1008172 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1714504 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2666521 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2753483 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 14432 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 14486 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 14486 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1268272 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 1552682 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile