RNA id: XM_026932269.2


Basic Information

Item Value
RNA id XM_026932269.2
length 2002
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113537655
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12545878 ~ 12553072 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACATTAACTCAGACGCAACAAAGTCTGAATGTAAAAGTTCattgcgctctctctctctctctctctctctcacacacacacacacacacacacacagagagagagagagagagagagagcaatgaaCTCAGTAAACCCTGGGTGGAGTTTGTTTTATTCGCCAGTGTATTACAGCATTTCTCAGAGACACATTCTGTGGTATTCATTCTCCTGTGTAGAGACAGTTTTATCCATTCAGCATTACCATGGCATCCCAGATGGGAATAAGTGAAGCAGAGATGAATGAGATGAACACCGTCACGCACTCCCACGTGGTCGCTGATGTTGTGGCACAAGTGGAAAGCATGCTTGCACAGATGAAATCTGTGACTCTGAACATTGCAGTTACGGGAGAGTCAGGGTCAGGCAAGTCTTCTTTCATCAATGCTTTCCGTGGGGTTTCTGATGATGAACCTGAAGCAGCAGAGACAGGTGTAACAGAAACCACCCAGAAGGCCTTAGCATATTCACATCCCAATGCTAGTAATGTCTTGCTGTGGGACCTGCCAGGGATTGGGACTCCCTCTTTTCAGCCTGCAACCTACCTGGAGGATGTTGGCCTACTAAAATATGACTTTTTCATCATTGTCACATCTGACCGGTTTCAAGAGTACCATTCTGCACTGGCTAAATATATAATGCAAGCTCAAAAGAAGTTTTATTTCATCAGGAACAAAGTGGATCGAGATTTGGAGGCAAATGCTAGGCGCAGGAGTCGGAAAGGTTTGTCAGATGATGATGTCTTGGACCTGCTCCGTGTAGAATGTGAAAATAATCTGAGAAATGGTAAGGTGGAACAACCACAGGTTTTCCTGCTCTCCTGCTTTCGCCCACAGCGCTATGACTTCCCTGCACTCCAGATAACCTTGCTAGAGGAGCTGGAGGGACACAAGAGACATGCCCTGCTCTTGTCACTACCCAATCTCAGTGTGTCGTTAATACAAACCAAACGGAATGCATTAGCTCAAGATGTGTGGAAGAACGCAATCCTGGCATGCTTGAGCAGTGTCATGAGGGGTGCCACTCCCAATCCTATTGTTCCCAAACTGATGGAGACTTTAAAATATTATCAGCAAACATTCTGTGTAGATGCAAAATCTCTTCACCGATTAGCTGATACAACAGGCGTATCATTTGAGAAGCTTCAGAGTGAGGTAACTTCCACCTTTGGCAGAGAGCTGTCAGCACAGGCAGTGGAAGACTTGCTAAATCAGGTAGCTTCAGGACATCAACTCATGGCTAATCAGCTGCACAGCAGAGTCCCAGTTCTGGGCTCTGTCATTGCAGGTGGGATTTCTTTTGTGGCCTCCTACTTCCTGCTGAAATCTGCCTTAAAGGATTTGAGTGAAGATGGAGAAAGAGTGGTACAGAAATCCCTCTTTCACACTAGAAACAGGGATTAACCTGAATACATGGATGATTTTATGTAAgaatatcattttttttgtctaaattaTTCTTTTTGTCTAAAAGTTCTCTGATTCTACAGTTTAAGGGCATGAAGTCTCTGTTGGATCTTACTGGAATGGAAAGCAAACACAGCTGTGTACTGTACATTGTTCAAACCTAAAAAACATCccctctgctgttataataacctctactcttctgggaaggctttccactaaattttgcagcatggctgtggggatttgcccattcagccacaaaagctttagtgaggtcaggcactgatgatgGGTGAAGAGGCCTGGGAcacagtcggcattccagttcatcccgaaggtgttcagtggggttgaggtcagggctctgtgcaggccacttgattTCTTGATTTGACTTTATGGAACTCGATTTGTGCACAGTGCACAAATTTTGCTACATTGTTGTAAACAATAGGGTTCATTTGAAAAAAGGTTGACatggagaaaatgaatgaataaatgaatgaatagcatgtgctgttaggaaaataataaatgactgcttttcccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53462 lncRNA downstream 112754 12435274 ~ 12435483 (-) False nin
TU53441 lncRNA downstream 178888 12368513 ~ 12369349 (-) True G45249
TU53414 lncRNA downstream 244696 12290327 ~ 12303541 (-) True G45236
XR_004577842.1 lncRNA downstream 306116 12241609 ~ 12242121 (-) True LOC117596852
TU52939 lncRNA downstream 526769 12010931 ~ 12021468 (-) False pwwp2b
XR_004577879.1 lncRNA upstream 74639 12627046 ~ 12627481 (-) True LOC117596889
XR_004577878.1 lncRNA upstream 75270 12627677 ~ 12628388 (-) True LOC117596888
XR_004577880.1 lncRNA upstream 76065 12628472 ~ 12629256 (-) True LOC117596890
TU53526 lncRNA upstream 162277 12714684 ~ 12717329 (-) True G45305
TU53555 lncRNA upstream 167222 12719629 ~ 12721353 (-) True G45324
XM_026932212.2 mRNA downstream 14022 12530922 ~ 12534215 (-) True LOC113537616
XM_026939991.2 mRNA downstream 40641 12485749 ~ 12507596 (-) False trim9
XM_026939982.2 mRNA downstream 40641 12485749 ~ 12507596 (-) True trim9
XM_026939970.2 mRNA downstream 62611 12472527 ~ 12485626 (-) True pygl
XM_026940765.2 mRNA downstream 83176 12437823 ~ 12465061 (-) False nin
XM_026934693.1 mRNA upstream 78806 12631213 ~ 12633418 (-) True LOC113539135
XM_034302874.1 mRNA upstream 92208 12644615 ~ 12663466 (-) True dtx4b
XM_026945490.2 mRNA upstream 122346 12674753 ~ 12683749 (-) True zgc:66472
XM_034303011.1 mRNA upstream 133892 12686299 ~ 12696128 (-) True urb2
XM_026943181.2 mRNA upstream 172085 12724492 ~ 12732902 (-) True rab4a
TU53492 other downstream 14162 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other downstream 14162 12531443 ~ 12534075 (-) False LOC113537616
TU53378 other downstream 395731 12144895 ~ 12152506 (-) False tmem254
trnag-gcc_1 other downstream 839553 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 3319353 9224881 ~ 9228884 (-) True sf3b5
TU53537 other upstream 79406 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 86845 12639252 ~ 12639323 (-) True trnae-cuc_8
trnak-cuu_1 other upstream 87123 12639530 ~ 12639602 (-) True trnak-cuu_1
trnak-cuu_2 other upstream 116086 12668493 ~ 12668565 (-) True trnak-cuu_2
trnae-cuc_9 other upstream 116413 12668820 ~ 12668891 (-) True trnae-cuc_9

Expression Profile