RNA id: XM_026932379.2


Basic Information

Item Value
RNA id XM_026932379.2
length 1899
RNA type mRNA
GC content 0.48
exon number 9
gene id irf2a
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2126818 ~ 2143166 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGTTCCGCCTGCAGGTTTCACTTCGCACTGAACTGCGACGTTGGTTTGAATCCCAGCCAATCAGGTGCGAGCTCGCAGGCAGCACTTCCGCAgtgttttcattatttcaccaccagcagcaacagcagcagcagcagcacgtCTCTAATCACTGATCCGCCTGCACGTCTGCATGTCGGGACTTGGATCTAAGTGACACGATGGCAGAAAGACAGATCCTCTGATCagggaaaaacaacaacaaacaacaacaacaacaacaacaaacaagcCAAAAGTGAGATCAGGAGCCACTGGATACTCGATTAGGGTGAAGATGCCGATCGACAGGCAGCGGATGCGTCCATGGCTCGAGGAGCAGATAAACAGCGGTAAAATCCAAGGCCTGATCTGGGTTAataagGAGGAAAAGATATTCCAGATCCCGTGGATACATGCTGCCCGGCATGGCTGGGAATTGGATAAAGACGCTCCGCTCTTTATGAACTGGGCCATTCACACAGGAAAATACCATCCTGGAGTAGACAAACCTGACCCGAAGACATGGAAGGCAAACTTCCGCTGTGCCATGAACTCCTTGCCGGACATAGAGGAAGTAAAAGACAAGAGTATGAAAAGTGGAAGCAATGCATTCAGGATGTATCGCATGCTGTCTCCATCAGAAAGAGCAGCCAAGAAAGcaaagaagaaaaagatggaACGGGAGGCGAAAGCAAAAGGCCCTGTACAGAGACGGAAAGCTAAGAACAGCGAGCCGGAGAAAGAGTCGGAGTCGCAGTCGAAGGAAGACACGCTGCCGGACAGCACGGTTTTATCAACGGAACCTGATCAAAGCCCGGATCTCAGTTCGCCGAGTAAGACGACAGTAGGCTATCTGCCAGACATCTGCGCTGTCGTGGAGGTCACCACGGAGAACGAGGAGTCAGCAGTCAGCTCCACTCAGATCCCTTACAACTTCCAGGTCTCCCCTGTGTCGTGCTGCGCCGagagCGACGCTGAGAGCACACACAGTGAGGAAGACTTGGAGCCTCAGGACTTGTCCGTCGGTTCGAGACAATCTTGCTCCTCCGTGCTCAGGATAGCGCCCAGCCTTCTGGATAAATCGAGCTCGTTCATCTCGGAAAAGACGAACTTTTGGGTGACGAGCTGCCGAGAGGATTCGCCCATGATCAGCTACGACGTGGAGCCCTGGCGCCCGTTCCTCCCTGCCCTGACCTTCGACCTCAGCACCAGCTCCACGTCTCGAGCCAGTGTTATCATGAAAGCCGTGGACCTTTCCTCCAAAAAGACGTAGAACGGGGATTCGCTGCTAAACAGCCGCTCTGCTGCACAGATTTCATTTTTCCTCCGCCTGCATCCGTGGAGAGGTGCAGTGAACCgggtgttgttgttttttttttttcttttccctggTGCTACGTTCAATCCCTGGGAGCGTGTAAGGTGTACCTTTATCTGAATGTAAGGCCATGCAAAGCTAAAAGCTCGTCGAGTCGTTGACCCACAACagatatgtttatttagcaataaaattaaaactgtaGCTACCGagttaacattagctagctagtatcaTTTCGGGGCGATATATTTTTATCCTAAAATATTTACGTGGGTCAGGAAACTCGGTGATCCTGAACAAGTTCACGCACCGTCTCGGGTAGCTAAGTACCGGTTTTATAGCCCTGTCAGGATTAGAACGTTTTAGCTGAccgttaataataaataataataacaagtaACAgctgttaaattttttttccaaatttaatgaaataaaaatattgcagctTGACGATCATCTCTCCTGATGATAAATTGAGATGTCCAATATAACTGATTATCGAAACATGCCTATTCAACActaaagtgctttttttttttttttagatgttaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47079 lncRNA downstream 171 2123975 ~ 2126647 (-) True G39705
TU47072 lncRNA downstream 13284 2112542 ~ 2113534 (-) False G39699
TU47073 lncRNA downstream 13964 2109110 ~ 2112854 (-) True G39699
TU47069 lncRNA downstream 33520 2093092 ~ 2093298 (-) True G39696
TU47034 lncRNA downstream 35482 2045115 ~ 2091336 (-) True G39662
TU47156 lncRNA upstream 334526 2477692 ~ 2478424 (-) True G39774
TU47108 lncRNA upstream 490536 2633702 ~ 2984203 (-) False tenm3
TU47237 lncRNA upstream 582139 2725305 ~ 2727474 (-) True G39854
TU47681 lncRNA upstream 1350499 3493665 ~ 3583108 (-) False G40250
TU47679 lncRNA upstream 1359665 3502831 ~ 3507506 (-) True G40250
XM_026932538.2 mRNA downstream 115126 2007909 ~ 2011692 (-) True sod3b
XM_034302863.1 mRNA downstream 119565 2001449 ~ 2007253 (-) True aip
XM_026912183.2 mRNA downstream 147269 1969763 ~ 1979549 (-) True lgi2b
XM_026912185.2 mRNA downstream 161911 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA downstream 161911 1947375 ~ 1964907 (-) True ccdc149b
XM_034302849.1 mRNA upstream 76981 2220147 ~ 2984079 (-) True tenm3
XM_034302850.1 mRNA upstream 76981 2220147 ~ 2613941 (-) False tenm3
XM_034302851.1 mRNA upstream 76981 2220147 ~ 2582381 (-) False tenm3
XM_034302853.1 mRNA upstream 76981 2220147 ~ 2525813 (-) False tenm3
XM_034302852.1 mRNA upstream 76981 2220147 ~ 2521498 (-) False tenm3
TU46993 other downstream 147287 1977326 ~ 1979531 (-) False lgi2b
TU46931 other downstream 249235 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 249593 1871933 ~ 1877225 (-) False G39603
TU47094 other upstream 30192 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 889566 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 890700 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 891316 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577883.1 other upstream 2402418 4545584 ~ 4609450 (-) False dclk2a

Expression Profile