RNA id: XM_026932538.2


Basic Information

Item Value
RNA id XM_026932538.2
length 1861
RNA type mRNA
GC content 0.41
exon number 2
gene id sod3b
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 2007909 ~ 2011692 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGACATCACAATATTTCACTCCAATAACAACAACATGtccaaaaacagcatgaaaCCTGATCCAGGCTTACACAACCTCTTTCTGCGTGGTTGGACAAGAATGAAGGGAAAGAAGGCGGAggtgcagaaacacacacagcaccgaGCAGGACCAGAGGAAGAGGAATAATCAGAAGTGAAAATGATGTCTTACACACTCCTGGTGGTGTTCTTGCTCAGCGTTGTCTTCCACACACCGACACTGAGTGAGAATCTCAGCCTGAAGCCTCCTGAGCACGATCTGTTCAGCGGCTCTCTGTACGCCACGTGCAGGATGCGACCCAACACCCAGCTGGCGTCAGGAATGCCCCGAGTGTATGGACACGTCCTGTTTAAACAAACCGGGCCGGATGAGGAGTTACAGGTGAAGTTCAAGCTGCACGGCCTGCCTGCATCCAACTCTCAGTCCCGAGCGATACACATTCATCAGTACGGAGATCTCAGCGAGGGCTGCACCTCCACCGGCGGCCATTACAACCCAGAAGGAGCCAACCATCCGCTTCATCCGGGGGATTTCGGAAACTTTATTGCTCACAATGGGAAGATTCGCCAGTCTGTAGACTCCAAAGCCACTCTCTACGGCGGGTTATCGGTCCTCGGCCGTGCCGTGGTGATCCACGAGAAGGAGGACGACATGGGACAAGGAGGAGACGCTGGAAGCCTTCTGCATGGGAACGCTGGAGGACGACTGGCCTGCTGTGTGATCGGAATAAGCAGCTCCAAAGTCTGGAATAAATCCCATCTCTAAATTAATGTGGGGTTGAGTTTGTACATATAGGTCTGATGATATATCGGGCTGATGGTCTAGCGTGATAAGATATGAAATTATCTTGTTAATATTGGGTTAATTTGGTCTGAACATGTCCTAGCACGCTGTCATGGggtcagaaaacaaaacaaaaaagaataaaatataagtacaaaagtagaagaaagaaagaaacttgtACTTGTTTTGATCTTCTTACTAATAACCtacttcttctgtttcttcttgtccttctttattattaattattattcacattttcagtttgtttttatcttctgaacatgcatttgtttctttatttcttcattttgtttgtattcCCTCGCTCCAATTGGGCTGAGAAGGAAGTCCTGAAGATGTAAACTatataaatattgaataatttTGTACGTAAATCTTAACCTTAACAAATACGTCATGGTCCTTATGAAGAGGGCGAGTGGTGATggagttaaaaatgaaagaaatgaaaagaaaaaaaaaatgcaaagccaTTACAGATCATCTGCGACAGGATTTCTAAACCCAGAGTCTGACGAAATCAGATTTCTACAATGTTGTAATACGTCTAAAAATGTTCCACTTTAAACAATAATCTAACAGAGTCATTATACAAATGAAATCATTCTGGACAAACTGATTTAatccaaaaagaaaataatgaactatCAGTGTTAGCTAATTGTTTATGCCTTTCCTCTTTCAATCCAGTTCAATTAATCTCGCTTTAGATGTGTGATAAATAATGTGAGATTCAGtatttatctgtatttatctttttatagctCTCCTTGCACGTGACCTCGTGTTATGTTTAAAGAGTCTGGGTCATGTGGAGATAATTTATGGTCATGTTGAACATGATGATAAAATGGAGTtgatgtgttggtgtgtatctTTATTAGAGTACAGTCGTACATGTTAGAACATCTAATCAGTTACTGCAGTAAACTTTACTTTAACTCTCAGGTTTTTGCctaatcttttattatttactatgtatttttaatattgagGTATAACAGTCAATAAAATGCCcctatttcaaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0019430 removal of superoxide radicals biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16627 SOD3; superoxide dismutase, Cu-Zn family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47008 lncRNA downstream 7647 1998499 ~ 2000262 (-) True LOC117596860
TU47007 lncRNA downstream 7647 1998902 ~ 2000262 (-) False LOC117596860
XR_004577845.1 lncRNA downstream 7648 1998894 ~ 2000261 (-) False LOC117596860
TU46998 lncRNA downstream 10621 1987462 ~ 1997288 (-) False G39646
TU47000 lncRNA downstream 10621 1987462 ~ 1997288 (-) False G39646
TU47034 lncRNA upstream 33423 2045115 ~ 2091336 (-) True G39662
TU47045 lncRNA upstream 48062 2059754 ~ 2060427 (-) True G39672
TU47069 lncRNA upstream 81400 2093092 ~ 2093298 (-) True G39696
TU47073 lncRNA upstream 97418 2109110 ~ 2112854 (-) True G39699
TU47072 lncRNA upstream 100850 2112542 ~ 2113534 (-) False G39699
XM_034302863.1 mRNA downstream 656 2001449 ~ 2007253 (-) True aip
XM_026912183.2 mRNA downstream 28360 1969763 ~ 1979549 (-) True lgi2b
XM_026912185.2 mRNA downstream 43002 1947375 ~ 1964907 (-) False ccdc149b
XM_026912184.2 mRNA downstream 43002 1947375 ~ 1964907 (-) True ccdc149b
XM_026911038.2 mRNA downstream 112810 1893586 ~ 1895099 (-) True si:ch211-113e8.11
XM_026932379.2 mRNA upstream 115126 2126818 ~ 2143166 (-) False irf2a
XM_026932372.2 mRNA upstream 115127 2126819 ~ 2143166 (-) True irf2a
XM_034302849.1 mRNA upstream 208455 2220147 ~ 2984079 (-) True tenm3
XM_034302850.1 mRNA upstream 208455 2220147 ~ 2613941 (-) False tenm3
XM_034302851.1 mRNA upstream 208455 2220147 ~ 2582381 (-) False tenm3
TU46993 other downstream 28378 1977326 ~ 1979531 (-) False lgi2b
TU46931 other downstream 130326 1871933 ~ 1877583 (-) True G39603
TU46918 other downstream 130684 1871933 ~ 1877225 (-) False G39603
TU47094 other upstream 161666 2173358 ~ 2173751 (-) True G39720
trnae-uuc other upstream 1021040 3032732 ~ 3032803 (-) True trnae-uuc
trnah-gug_2 other upstream 1022174 3033866 ~ 3033937 (-) True trnah-gug_2
trnah-gug_3 other upstream 1022790 3034482 ~ 3034553 (-) True trnah-gug_3
XR_004577883.1 other upstream 2533892 4545584 ~ 4609450 (-) False dclk2a

Expression Profile