RNA id: XM_026932564.2


Basic Information

Item Value
RNA id XM_026932564.2
length 2463
RNA type mRNA
GC content 0.49
exon number 5
gene id sav1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12422281 ~ 12431644 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggcaacccggaCTGTATGGGCTGGGTACAGAGCAACAGGCTGGAGCCTACTCTAACTTTGACCACTCAACTTATTTCATAGCTTAGACTGCTTTATTGGGGTGGTAATAAAATTCTGTTGACGCGTAGAGAGACTGAAGTCAGTTGTTTATTAGTTGTGATAATGTAAGTCgtaataaaagtattaaaagtaaGTAAGGAAACTGAGTTAGCAGGCTCGtcgtgtgttttgttgttgttttagctaacgttagctagcgAATGCTGCTCTGAGCTCTAGTGCGAAGCTGATAGCCGGAGAACTGTGGCTTACGAGTTCAAAAATGAGCGTCTTTGACGAAATACTTTTCAGGAAACCATCACCGAAATGTTTTTGCCACTTTAATATCTCCTGCATTCACTGAGCTATGATGCTCCCGAGGAAGAAAAGTAAGAACGAAGCGTCCAAGCCAGCAGAGGTCCAGGGGAAGTACGTGAAGAAGGAGACCTCTCCTCTGCTCAGGAATCTTATGCCCTCATTCATCCGTCATGGGCCAACGATCCCGCGGCGAGCAGAGGTGCCATTGTCAGAAGCTCCAGCGGTACCTGGTGCCAGTGTGTACCCACTGAGTCCAGCGGCAGGGACAGACGCAGGTGGACGGAAGAGTTTCCTGCGTAATGCAACACCTCGACCCCAGCACGAGGTTTCTCGTCGAGACAGCCATCGTCTGTCTGCGCCAACATATCTTCCACGCTCGCTCCCTGACCTTCCTCACGACTACTCCCCTTCTACCCCCTCATTCATCAGTGACGGTGGACCGATAACGGAGAACGGAGATGTGGCCCGTTACTACTATCCCCCCGAGGCGTACTACGATAACCAGCCCAGGCGCACACGCCGAGCCGATCACTTCCACGACGACTACAGATATTACGAGCACAGCGAACTCAATTATCCACGAGGCCCTACGCAGCCTCAGACATCCCAGCCTCACATTCGCCCACCTGCAGCTATTGGACGCATGCAGGCAAAGTCTCTAGGCAATCTGGCGAGTTTGGGTGGAGAGGAGACGGCCCTTCCACCTGGCTGGACGGTTGATTGGACGATTCGAGGCAGGAAATACTACATCGaccacaacacaaacaccactcATTGGAGTCACCCGCTGGAGAGGGAGGGGCTTCCACCTGGCTGGGAGAGGGTGGAGTCTGCAGAGTTTGGAGTTTATTATGTCGACCACATCAATAAACGGGCCCAATACAGGCATCCGTGTGCTCCCAGTGTTCCACGCTACGACCAGCCTCCGCCCCTACCTCCACCAATCACTTACCAGCCCCGTCCCCCCGAGCGGAATCAGCCAGTGCTGGTGCCAGCAAACCCCTACCACACCGCCGAGATCCCGGACTGGCTGCAGGTCTACGCCAGAGCACCTCTTAAGTATGACCACATCCTAAAGTGGGAGCTGTTCCAGCTGATGGATCTGGACACATATCAGGGCATGCTGAAGCTGCTGTTTATGAAGGAGCTGGAGCGCATCGTTAAATCATACGAAGCTTACCGTCAAGCACTGCTCACCGAACTCGACATGCGCAAGCAACGGCAGCAGTGGTACGCTCAACAGCCAACCAAAAACTTCCCTCACAACATGTGAACTGCAGGAGACTGACATCCGGAAACACACATGCCTTAATACATACAATGCCAAGCCTCCACATGcgtctgcctctgtgtgtgcctTAGCAGCGTACAAGTGTCAAGTGTGGActacacacacgctcacactaCGACATATAGCAGATGCTCGTAGGGTGTGCTCAGACTACATGAGAATAAAAGTGAGAGCTGCACACCTACAAGCAGCGTTTGTATAATGTAAACTTTATCCGTTTTATAGCCTGAAAGATTAGGTGTGTGGCTGAATTAATGACGATGAGTTTCCGGAAGATCTTCCAGCCAAAATACTATCAAAAGATGCTATAGTGACCATTACCCTCTCTACAGTTTAGATAACACTACAGTGCCTTTTGGAAACTGGGACCTGGTCACTAGTGAATCATTTTCCTGAACTAAAtatctttctcacacacacacacacacagagctcttcCTGTGTTTCGATTGTCTGAAGAGTGTTATAATCCTGTATATTCTTTTCTTCAGCCTGTGTGGCCACTCAGCCTGTAGAACACACTCTTCTGCCTTCAGTCTATGGACAATGAAGCTTTTATATGGACTTTTCCTGACAACGACAATCCAGCCTGTTCTAAATGTAAAAGGTTCGTGAATTTTTCCAAAGGAATATGTCTTTATTTAAAGACTAGATTTTGTCAGCAGAAGCATCACATGTGATGCAGGGTAAGTGTGAGCTCTTTTGGCTCTTAGCTTTGTATCTTtatgtatgtctgttttttcctgcataatgaaattatatataaacatatataaactaAAAACCTCTCCATGCTGTGTAACAGCAATATGTT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K16686 SAV1, Sav; scaffold protein salvador

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53441 lncRNA downstream 52932 12368513 ~ 12369349 (-) True G45249
TU53414 lncRNA downstream 118740 12290327 ~ 12303541 (-) True G45236
XR_004577842.1 lncRNA downstream 180160 12241609 ~ 12242121 (-) True LOC117596852
TU52939 lncRNA downstream 400813 12010931 ~ 12021468 (-) False pwwp2b
TU52938 lncRNA downstream 414252 12007826 ~ 12008029 (-) True G44848
TU53462 lncRNA upstream 3630 12435274 ~ 12435483 (-) False nin
XR_004577879.1 lncRNA upstream 195402 12627046 ~ 12627481 (-) True LOC117596889
XR_004577878.1 lncRNA upstream 196033 12627677 ~ 12628388 (-) True LOC117596888
XR_004577880.1 lncRNA upstream 196828 12628472 ~ 12629256 (-) True LOC117596890
TU53526 lncRNA upstream 283040 12714684 ~ 12717329 (-) True G45305
XM_034302694.1 mRNA downstream 20794 12358272 ~ 12401487 (-) True map4k5
XM_026944957.2 mRNA downstream 65513 12343235 ~ 12356768 (-) True cdkl1
XM_034302792.1 mRNA downstream 91354 12304731 ~ 12330927 (-) False klc1b
XM_034302794.1 mRNA downstream 91355 12309548 ~ 12330926 (-) False klc1b
XM_034302793.1 mRNA downstream 91359 12299197 ~ 12330922 (-) False klc1b
XM_026940747.2 mRNA upstream 3465 12435109 ~ 12465063 (-) True nin
XM_026940757.2 mRNA upstream 3466 12435110 ~ 12465056 (-) False nin
XM_026940765.2 mRNA upstream 6179 12437823 ~ 12465061 (-) False nin
XM_026939970.2 mRNA upstream 40883 12472527 ~ 12485626 (-) True pygl
XM_026939991.2 mRNA upstream 54105 12485749 ~ 12507596 (-) False trim9
TU53378 other downstream 269775 12144895 ~ 12152506 (-) False tmem254
trnag-gcc_1 other downstream 713597 11708614 ~ 11708684 (-) True trnag-gcc_1
TU51003 other downstream 3193397 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 3568487 8801243 ~ 8853794 (-) True G42967
TU53492 other upstream 92992 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 99799 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 200169 12631813 ~ 12633015 (-) False LOC113539135
trnae-cuc_8 other upstream 207608 12639252 ~ 12639323 (-) True trnae-cuc_8
trnak-cuu_1 other upstream 207886 12639530 ~ 12639602 (-) True trnak-cuu_1

Expression Profile