RNA id: XM_026932621.2


Basic Information

Item Value
RNA id XM_026932621.2
length 1768
RNA type mRNA
GC content 0.39
exon number 11
gene id mtg1
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10557601 ~ 10562588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGagcagtgcgcatgcgcatgTTTGTTCCGCAGTCTGTGAATGTATAGCTCGTCAGCGTGCCTGTTTAATGCGCACTGTACTAGCATCATATCACCAGTAAATATAAACTCACATGACTGGATCATTGTTAATGTAAGCGTGATTAACCCCGGCTCACTGACTGAAGTATGACCAGTGTCTTGGCTTGATAAACTGCTGAACATGAGGATTTGTCACGCTTTACTCAGTGCTGTACAGTTCAGGACTGTGTTTGATTTCGGCCAGAGAGAAGTTGCACACTGGTTCCCTGGACATATGGCTAAAGGACTCAAGCAAATGAGAGCTAGCCTGAGGAAGGTTGATTGCATCATTGAAATCCATGATGCCAGAATACCATTTTCTGGAAGAAATCCTTTGTTTCAAGAGAGCCTTGATGTCCGGCCACATTTACTCATACTGAATAAGATGGACCTGGCAGACACATCAAACAAATTGAGTATCCTGAAACAGCTTGAGAGAGATGGAGTTAAGAACGTCTTGTTCACAGACTGTCTAAAGCAAAGAGACGAGAGTATTAAAAAGATAGTTCCTCTTGTAACAGACCTAATTGAGAATGCACCTCGTTTCCACAGAGAGGAGAACAGAAGTTATTGCCTCATGGTGATTGGAGTGCCAAATGTTGGGAAATCTTCATTGATTAATGCTTTAAGAAGAACAAACCTGAAAAAAGGCAAAGCCTCAAGGGTTGGAGGTGAACCTGGAATTACTAAAGCTGTCCTGACCAAAATCCAGGTGTGTGAAAGACCCATCATACATTTGCTTGACACACCGGGAGTGCTGTCTCCTAAGATCGAGAATGTAGAGACTGGGATGAAACTCGCCTTATGTGGTACTATACTGGACCACTTGGTTGGTGAAGATATCATAGCTGATTATCTGCTTTTTTCACTCAACAGACTCCGGCGGTTTGGCTATGTGGAGAGGTATGATCTAGACACACCATCTGATGATATTCAACATGTGCTGAAGTGTATTGCTGTTAAGTTAGGCAAGACTCAGCGAGTCAAAGCCATCACAGGAGTAGGCGACATTACCATCAGAATGCCTAACTACACCGCTGCAGCCTATGACTTCATCAGAGCTTTCCGTAAAGGAGAGCTGGGCAAAGTCATGCTTgactaataaaacacaaaacatgttgCTTATGTTGATGAGAGATTCATGATATTCATGGTAATGGCAATTGTGATAATCCTGTATTAATATATTGATTAAATTCTATTGCACAAAGATGCTTTGGTGCTGTTTCTTACAGTTCTCTGATGTAATACTAATGAAATACTGTgtgcaaacaataaaatatatacttacataaaaacagattttcctATGTAATATTAAAACAGCACCTATAAATAAGTGATACAGTgactaattttatttaaatatcttttacAAAATGCTCTAGCTATGATTTTTCCCAGtcagtcatatatatatatacacacacatacatacacacacacacacacacacacacacaatgatatTTCCAACTCTGGGCATATAATCATTTCACAGTCTTAGTGAAAGTTGGTTGCAGAATAATATGAGATCATAACATCGCTTGAAGAATACAGTACTTATACAGTACAGATAATGGAAACAAGCAATAAAAAAGTCACATTAAGCTATCTATATGTGATTCTAAAAATCTTATCTAACAGTTGGGGACAAGGTTGTCCTGTCACATTGTTTAATCTGTAATTGTGTGACTAAACATTGAA

Function

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005761 mitochondrial ribosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K19828 MTG1; mitochondrial GTPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51991 lncRNA downstream 241153 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 252519 10291067 ~ 10305082 (-) True G43982
TU51974 lncRNA downstream 292013 10265356 ~ 10265588 (-) True G43981
TU51966 lncRNA downstream 303663 10253724 ~ 10253938 (-) True G43978
TU51888 lncRNA downstream 314719 10241941 ~ 10242882 (-) True G43910
TU52133 lncRNA upstream 91126 10653714 ~ 10655844 (-) True G44103
TU52138 lncRNA upstream 110758 10673346 ~ 10723668 (-) True G44105
TU52216 lncRNA upstream 254084 10816672 ~ 10817292 (-) True G44173
TU52312 lncRNA upstream 359721 10922309 ~ 10925258 (-) True G44262
TU52323 lncRNA upstream 390917 10953505 ~ 10956492 (-) True G44271
XM_026941836.2 mRNA downstream 40644 10513951 ~ 10516957 (-) False chchd1
XM_034302507.1 mRNA downstream 40692 10513951 ~ 10516909 (-) True chchd1
XM_026932576.2 mRNA downstream 45754 10492837 ~ 10511847 (-) True si:ch211-51a6.2
XM_026936466.2 mRNA downstream 68794 10449319 ~ 10488807 (-) True zswim8
XM_034302798.1 mRNA downstream 109874 10331733 ~ 10447727 (-) False ndst2a
XM_034301541.1 mRNA upstream 4769 10567357 ~ 10568828 (-) True LOC113541130
XM_026936634.2 mRNA upstream 25288 10587876 ~ 10593240 (-) True pbld
XM_026942485.2 mRNA upstream 45271 10607859 ~ 10615623 (-) True opn3
XM_026943376.2 mRNA upstream 87865 10650453 ~ 10659241 (-) False cdc42ep3
XM_034303069.1 mRNA upstream 87865 10650453 ~ 10659241 (-) True cdc42ep3
TU51003 other downstream 1328717 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1703807 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1703807 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1773803 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2087172 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1146026 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1582307 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1962048 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1968855 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2069225 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile