RNA id: XM_026932754.2


Basic Information

Item Value
RNA id XM_026932754.2
length 3478
RNA type mRNA
GC content 0.42
exon number 9
gene id mat1a
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19011981 ~ 19018909 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgttttctcctgGCCATAAATAGGAGCATGCTTGCTTAGAGACCTGTTGATATTCAGTGATCTGAGTGTAGGATCTGAGATCCTAAAATCTGAAGGATATAAAGAATACATTTTAGCTGCACTTGGAAACCCTTTAAAAGTCCCTTTTAGATATTGCTTTCTAGTTTATTTCTGAAGTTTTCAGAGTTAGATTACAAACATGGATATAGTGAATAACTTCACAGATGATGGTTCTTTCATGTTCACGTCAGAGTCAGTGGGAGAAGGGCATCCAGACAAGATCTGTGACCAGATCAGCGATGCTGTCCTTGATGCACATTTGAAGCAGGACCCTGATGCCAAAGTAGCCTGTGAGACTGTCTGTAAGACTGGTATGGTGCTTCTGTGTGGTGAGATCACATCCAAGGCCAGTGTGGACTACCAGAAAATTGTGCGGGACACCATCAAACACATTGGTTATGATAACTCTGATAAAGGTTTTGACTATAAGACCTGCAATGTACTGGTGGCTCTTGAGCAGCAATCTCCTGATATTGCACAGGGTGTACACGTCGATCGGCATGAAGAGGACATTGGAGCTGGAGACCAGGGTCTGATGTTTGGTTATGCCACTGATGAGACAGAGGAATGCATGCCTCTAACCATTGTCCTTGCCCACAAACTTAATGCCAAGATGGCTGAACTGCGTCGTGATGGCACTATTCCTTGGCTCCGTCCAGATTCCAAAACACAGGTGACTGTACATTACAAGCAGGAGAACGGAGCCATGATTCCTGTGCGTGTGCACACTGTGGTCATTTCAGTCCAGCATGATGATTTCATCTCACTGGAGGAGCAGAAGAGGATTTTGAAGGAGAAGGTCATCAAGGCTGTAGTGCCAGCTAAGTATCTTGATGACAACACCATATACCATCTACAGCCCAGTGGCCGCTTCGTCATTGGAGGACCTCAGGGAGATGCTGGACTCACTGGGAGGAAGATCATTGTGGATACGTATGGTGGATGGGGTGCCCATGGTGGTGGAGCATTCTCTGGAAAGGACTACACCAAGGTGGACCGTTCTGCAGCTTATGCTGCCCGCTGGGTGGCCAAGTCTCTGGTCAAAGCTAAACTTTGCAAGAGAGTTCTGGTACAGGTGTCTTATGCTATTGGAGTGACCCACCCACTGTCTATCTCACTCTTCACTTTCGGTTCGTCtgagaagacagagaaagaactGCTTCATATTGTTAACAAAAACTTTGACCTTCGGCCTGGTGTTATCGTTAGGGACTTGAAGCTGAAGAGGCCCATTTACCAGAAGACTGCCTGCTATGGTCACTTTGGCCGGCCTGAATTTACCTGGGAGGTTGCCAAGACCCTGGCATTTTAAGCTGAACAAGGCTCGAGATGCTTCCAACCATACAGACCTCGAACAGAATAACTGAGAGCAGTCCTGTCCTCTCCCGTCCCTCTCTCTGCCTTTACTCATCTCACCATCTGAATACCATTATATTCATCTGAGGCTCAACACTGAATGAATATTATCATGCAGTGTAGGAGTTTAGAAGCAGCTGTCAATATAAAATAGACTATATGGCataaagtttgtggacacttgaccataatacccatatgtgctttttgaacatcctattccataTTTAGTCCAactttgctgttttaataacctctgggaaggctttccactaggaGACTTCAATCTTATCCGCGAAGAGCCGGTTTGGCTGCAGGCTTTTATACCAGCCAAACGGGAAGCACACTTGACAGATGATTGGAgaccaagatgaactgattaaataaGTGGAATCAGTTGTGGCTCTCACTTGATTGGagtgaaagcctgcagccacaccggccctttgtggataagactgaAGACCCCTGCACTAGCTTTTGGagcattcagccacaagagcattagtaaggtcaggcactgatgtgttcagtgtggttgagatcagggctctgtgcaggacactcgagttcttccactctcatcttggcaaaccatgtcttcatggacctcactttgtgcatcggggcattgtcatgctggaacaggtttgggccccttattTTCAGTAAAGAGAAAGTGTaacactacagcacacacagacattctacacagttgtgtgcttctaactttgtggcagcagttaggggaagaaccacatatgggtgtgatggtcaggtgtccacacttttttttgtcatacagtatattttccaATTTTCCATATCTGTAGAAAATGCAGCATTTTTGCTCAAGCCAGTTTTATTTTGACATGCAAATTTAACACTATAAAGAGCGTTGGCAAGAAATTCCACAACAACTGCCTTTGAAACAAACCCACCACATGGAAATTTGTGCTGCTCAGGGAATGATTGCAGTACCTGTTCTAATTCAGAGCCACTCATATCTTAATTGTAAGTGCAATATATAAGGTGTAAGTGCAgtcactttctgtctcttcaGTCTTAAGTACCGCAGCAGCTTCCACTGAGCACTAGATGAGACTTACAGTCAAGGGTACTTTTTAGAATCCTTGTGTGAATTAGACATGTTCTACAAAACCTGTTACAACTGGTTTCAAACACACAGATTAGCGCTGTTTTCATTATAGTGTTGTATACTACAGTTAATAATGTGTATGACTATCTAGTTAAAGTGCAGTTGTCTTGTCTTTATCGTCTCCACAAAAAGACCTGCTGCTTCTCATTGAGAACTGCTATTGACTGACaatcattattttcttatgtatTACTAGGAGCTGCAAAACACAAATGACCAATCAAATAATGCTGCTCACTATAATTCAGGTCACAACAAAGGGTGCAactatactgattttttttttttttttttttaatatactggGCATTTTTATTATACTGCAATTGCAATACATATGTAATTGCAATATGGTATTCTGTCCATGTTGCGCAGCTCTATTTTAAACCTGATACTTTACTAGATTTGTTGGTTTGAAGTGAAGCATGGGTATGAATTGGTGGaccattataatatttaaagtaaaataagcTTGGTGTGAGACTATTATTTCTTCTGATAAAGGTTTTAAatgtgtgctttaaaaaaaaataaaaatacagagtatggcatgaaaaatgaaaaacagtggTGTAGGATACATGCAATAATACATCAGTGTCAGCCTGTTTACAGATTCACTGTTATACAGTAAGAACATTATTTACAAACAGCtagtgtaggagtgtgtgtctgtgtaatcAGCTAAAACCCAAATCATGCCTGGTGACTGATGTGTGCTAATCCTCCTTTCTATATGTCCAAGCTACTCCTATTTATAGCAAGCACTATAAGTCCTGCCTGTTCTTATCAGACAAGTTCTGTTCAAATGTGCCCTGTCTTTGTTATACGTGATTTTATCTGTGTAAATAATtgtgaataataattattaaaaacctAAACAGCTATTTAATCAGAA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0006556 S-adenosylmethionine biosynthetic process biological_process
GO:0004478 methionine adenosyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K00789 metK; S-adenosylmethionine synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57913 lncRNA downstream 42185 18969591 ~ 18969796 (-) True G48975
TU57908 lncRNA downstream 54522 18957157 ~ 18957459 (-) True G48970
TU57886 lncRNA downstream 82479 18928182 ~ 18929502 (-) True G48954
TU57878 lncRNA downstream 121169 18890563 ~ 18890812 (-) True G48947
TU57868 lncRNA downstream 158268 18853513 ~ 18853713 (-) True G48940
TU58001 lncRNA upstream 33618 19052527 ~ 19052751 (-) True G49053
TU58066 lncRNA upstream 171418 19190327 ~ 19190615 (-) True G49108
TU58155 lncRNA upstream 232684 19251593 ~ 19251863 (-) True G49184
TU58193 lncRNA upstream 381755 19400664 ~ 19400863 (-) True G49215
TU58214 lncRNA upstream 408837 19427746 ~ 19428725 (-) True G49232
XM_026937044.2 mRNA downstream 108461 18898163 ~ 18903520 (-) True si:dkey-228d14.5
XM_034302735.1 mRNA downstream 108978 18898163 ~ 18903003 (-) False si:dkey-228d14.5
XM_026932472.2 mRNA downstream 159874 18845152 ~ 18852107 (-) True slc25a16
XM_026945920.2 mRNA downstream 174184 18831551 ~ 18837797 (-) True alox5a
XM_026940107.2 mRNA downstream 183659 18810075 ~ 18828322 (-) False washc2c
XM_026934553.2 mRNA upstream 18083 19036992 ~ 19044321 (-) True sfxn3
XM_034303009.1 mRNA upstream 46124 19065033 ~ 19114569 (-) False lzts2a
XM_026942868.2 mRNA upstream 46124 19065033 ~ 19082306 (-) True lzts2a
XM_034302895.1 mRNA upstream 119586 19138495 ~ 19171153 (-) True sema4ga
XM_026941939.2 mRNA upstream 154331 19173240 ~ 19185983 (-) True slf2
TU57664 other downstream 398580 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1350597 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1437559 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1437559 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1535920 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 297578 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 616929 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1339025 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1339079 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1339079 20357988 ~ 20369429 (-) False gng2

Expression Profile