RNA id: XM_026932931.2


Basic Information

Item Value
RNA id XM_026932931.2
length 3190
RNA type mRNA
GC content 0.45
exon number 6
gene id march5
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10894351 ~ 10927228 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAGTCAGGAGCTGTAAATGGAGTCCAGCGGTCACGCTGACACGATAACGCCGAGAACAGACGAAGTGTTAGCGGTGTGGTGTGAGAACGCTATCCGTGAGCGTAAAAGCAGTGTTAGTGCCAGTTATTAGCTTGTTATGTGATAGCTTAGCTTAGTGTTGTGTGCTCTATcgcagctagttagctagcataaCTGCTACAGCGCAGCGAGGTGGGCTCGGGCTTGTCGTTCTCCTGAAGGCCTGGCTTTAGCTTAGCTTATCTtatagcttagcttagcttagcttatcTTAGCATAGCTTCCGCTAATTACCAAATAGTTTGTAAGAACTAGCGATTCCTGTGTGATTTTGAAGGCTACAGAGCACAAGGCATGGCAGACGAGACCGCCGTTGCAATGCAGCAAATGTTGGACAGGAGTTGCTGGGTGTGTTTTGCCACAGATGAGGATGACCGCACTGCTGAGTGGGTGCGGCCGTGCCGATGCCGTGGCTCCACCAAGTGGGTGCACCAAACCTGCCTCCAGCGCTGGGTGGACGAGAAGCAGCGGGGCAACAGCACAGCACGCGTGGCCTGTCCTCAGTGCAACGCCGAGTACCTCATCGTCTTCCCCAAGCTGGGGCCCATTGTGTATGTGCTGGACCTGGCAGACAGGCTCATCTCCAAGGCATGCCCGTTTGCTGCCGCTGGCATCATGGTGGGTTCCATCTACTGGACTGCGGTCACATATGGAGCAGTCACAGTGATGCAGGTGGTTGGCCATAAGGAGGGGCTGGACGTGATGGAGAGGGCTGATCCACTGTTCCTCCTTATTGGACTGCCCACCATCCCCGTTATGCTCATTCTGGGAAAGATGATACGCTGGGAGGACTACGTGCTGCGTCTGTGGAGGAAGTATTCCAACAAGCTGCAGATCCTCAACAGCATCTTCCCAGGGATTGGTTGTCCAGTTCCCAGAATCCCTGCTGAGGCAAGTCCGTTAGCCGATCATGTATCAGCCACTCGGATCCTGTGTGGAGCGCTGGTGTTTCCCACCATCGCCACCATCGTGGGCAAGCTCATGTTCAGCAGAGTCAACTCCAACCTGCAGAGGACCATCCTGGGTGGCATTGCATTTGTGGCCATTAAGGGTGCATTTAAGGTGTACTTCAAACAGCAGCAGTACCTCCGCCAGGCCCATCGTAAGATCCTCAACTTCCCCGAGCAGGAGGAGGCCTGAGTGGCCGAGAGCCAATGTCCACAGCCCTTTACAGACAGAGACATCACCGAGACCTCCATGCCACCTGCACCATgtcgtgtgcgtgcgtgcgtgtgtgtgtgtgcgtgtgctgcAGAGCGAATACAGATGACTGCTGCTGGAACAGGCTTTACCCCAGCTGCTACGACTTGAGGAATGTGTATTtgagaggagaggagtggaCAGAGTGATGGATGTTGCAGCACACACTGATGCATTTCTGATTCACGTAAGCTGTTCAGTCTTGTCTCTCCCTgagaatgtgattttttttttctctctctctctcctctctccatgtGTACTAGTAAAGATTCAGACTTTGTCTCCTGTGTTATAATCAGAGCTGGGAGAGGTTCcttcttttctgtattttttaggTTGTGGTACTTTTAAATTAAGAGTAGGACATGTGGAATTATAAAAGAGTTTTATGTGAATAAATGACTGATTTTATAAACACTACTCTGATGGTGAGATGGATTAGAAATATTGCCTTTTGGTGATGACTCTTTCAGTGCTGACTGGGTGACATTAATGATTCAGTGACTCTGCTGTATAAATGTATACTTGTAGCAGCATGTGCTCAGcctacattacattttaatagaGAAAAACACTGGGTTTCTGGACACACATTGAGGCTAGTCTGAAACTAAAATTTTTAATCTACAATGTATTTTCAGTTTAGACTAGTATTAATGTGCGTCCAGAAACCTGTCTCAGTTGTAAAATGATCAGAGATGCTATTAGAGCTGGAGTATCACATCTACACTATGACTAATGTAAAATCTTTCTGCAAGCTTGAAAAGCCTCCATCAGTTTGGTACAATTAAGTTATGATGAAAATGCAAATTACTAGTCAGTTTTGATATTCTAGAGAATCGTGAGAATGTGCAACATACAAAAAGGGACTAGGTGTCTCATTGCTCAcccaaaaaaaagctttatttctAAAGAATAATTTATTTGAAGGTCAGATTTAAGATGTTATTTAGAACTAACATCTCCAAGCTGACTAATTTCTGGTGCTGTTTAATGATCTAAAAGAAAATGAGTCCCTGATGACCCTGTGAATAAGATTACTCTGTGATCACATCACCATGTGGTTTGGAAAATCAAACTCCCGGAAAAGCCATTGTCTCTGATGTATGGACAGTGTTTCTGGGCGAGCTGCATCACTGTCCCAACCTTCACTCACTCTTCACGATCCTGACTACAATGAACTGGAAGTGCTTATTCCATTTCTTCATGCTATGCCTGAAAGTTATGCTTCTTTCCAAGATGAAGTTCCATGGTTTACTACAGGACAGATAGCTTGAGTGCATTATTATACTGAGCGTTGTGAGATGTTTATCATGCCTAATGGATGATGGATCTAAGTGACTTTCTATCCATGTGATCACTACTAATTTTGTGCATCTGTGATTACCATTTATATATGATCAGAACAGAGGGAGTGTTGCTATCAGTGTATAACATAAAAATGGAGggatttttttggggggggaaACAGCACACTAGTAACAGCTGACTGCAGTGTGAAGGATGACAGCCCTGTGCTCAGCTTTTACAACCTGATGCAGTCACTTCAGCCCTTAATGCTATGTAGCTGCTTTAGCAGGTTTTTAATATTACCTGGTATAGCACTTGTTATACACTTAACACAATTGATCTAATCCAGAAAACATGTAGAAAATGTTCATGCACTTAGAAAAAATGTTTGATAAAAGCCACTGGCTTATCTTTATCCAACTGGTTATTGTCATTTCCAGCCAATAGTCATTTAATCACTGTGTCTAACAAGTTCTTTGAATACGTTAGAAATCTGGCTCACCATAATGCCAAACACAAGCAgtgatgtataaatgtataacttGTATATACAGAAATTGCTTCTGAATTTACAGTTATGGTTGATTtgtgaataaatgtatttttccaaTGCTTGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52216 lncRNA downstream 77059 10816672 ~ 10817292 (-) True G44173
TU52138 lncRNA downstream 170683 10673346 ~ 10723668 (-) True G44105
TU52133 lncRNA downstream 238507 10653714 ~ 10655844 (-) True G44103
TU51991 lncRNA downstream 577903 10315725 ~ 10316448 (-) True G43987
TU51975 lncRNA downstream 589269 10291067 ~ 10305082 (-) True G43982
TU52323 lncRNA upstream 26277 10953505 ~ 10956492 (-) True G44271
TU52326 lncRNA upstream 47591 10974819 ~ 10978423 (-) True G44274
TU52327 lncRNA upstream 51418 10978646 ~ 10980295 (-) True G44275
TU52647 lncRNA upstream 459978 11387206 ~ 11387946 (-) True G44582
TU52906 lncRNA upstream 912224 11839452 ~ 11839822 (-) True G44818
XM_034302753.1 mRNA downstream 32241 10856138 ~ 10862110 (-) True dennd10
XM_034302754.1 mRNA downstream 32937 10856138 ~ 10861414 (-) False dennd10
XM_026945155.2 mRNA downstream 44638 10845031 ~ 10849713 (-) True prdx3
XM_026943420.2 mRNA downstream 97256 10785741 ~ 10797095 (-) True polr1b
XM_034301338.1 mRNA downstream 158454 10731531 ~ 10735897 (-) True LOC113545523
XM_026939537.2 mRNA upstream 55366 10982594 ~ 11010366 (-) True btaf1
XM_034302584.1 mRNA upstream 110741 11037969 ~ 11041301 (-) True ccnj
XM_034302583.1 mRNA upstream 110741 11037969 ~ 11040883 (-) False ccnj
XM_026942945.2 mRNA upstream 110741 11037969 ~ 11040858 (-) False ccnj
XM_026943244.2 mRNA upstream 127540 11054768 ~ 11094954 (-) False blnk
TU51003 other downstream 1665467 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 2040557 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 2040557 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 2110553 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 2423922 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 781386 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1217667 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 1597408 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 1604215 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 1704585 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile