RNA id: XM_034301825.1


Basic Information

Item Value
RNA id XM_034301825.1
length 4280
RNA type mRNA
GC content 0.41
exon number 11
gene id LOC113538140
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 11595230 ~ 11650202 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGCACAAGCATAAGACAACAGGTTTATAATCAGACGGGTTTGggcagacaaaaaaacagatgttaCAGTGTGTCTCACCAGACAATAAACTCTAGGAGGCACCTGCTGTCTTCCTGAAATTGTGATCATGATCCCTTCCTGTTTCACTCTGTTTGCCTTCATCCTCTTCAGCAGCATCCTGGAGGAGCCACTGCTGAGTGCTGAGGTGAAGGAAGGAGAGATTCTGCCTCCTACCATTCAGAAGCTGATGAAAGGATACAACAAGTACCTGAGGCCTTTCTTTGACAATGGCCCTGTCACTGTGGGAATGAGTTTGGACATTGCCAGCATTGACACAATATCAGAGATCAACATGGACTACACTGCCACCATCTTCCTGCGGCAGCGCTGGACAGATGAGAGGCTGGTGTTTGAAGGCAATAAGAGCTTGAGTCTGGATGGGCGTCTGGTGGAGCTGCTCTGGGTTCCTGATACCTTCATTGTGGATTCCAAGAAGTCTTTCCTGCATGATATCACAGTGGAGAACCGGCTGATCCGAATCTTCCCCAACGGGACTGTGCTTTACGCTCTCCGGATCACCACCACTGTGGCCTGCAACATGGACCTGACTAAATACCCCATGGATAAACAGACATGCACCCTACAACTGGAAAGCTggGGTTATAATGTCAATGATGTGATGTTTTACTGGGCAAGAGGCAATGATTCAGTCAGTGGGTTGGACACTCTGCGTCTGGCCCAGTACACAGTAGAGGATCATTACACTTCTGCCTCAGAGGCTGTGTATGAGACAGGTAATTATCCTAAACTCATATTCCACTTtgagctgaagagaagcatCCTCTACTTCATCCTGGAAACCTACGTGCCCTCCAGTCTGCTAGTCGTGCTCTCCTGGGTGTCCTTCTGGATCAGCCAGTCATCTGTGCCTGCTCGCATATGTATAGGTGTTACAACAGTGTTAACGATGACCACTCTGATGATGGGTGCAAGGACGTCTCTACCCAACGCTAACTGCTTCATCAAGGCAATAGACGTGTATTTGGGAATTTGTTTCAGTTTCATCTTTGGAGCTTTGATAGAGTATGCTGTTGCTCACTTCTGCACACTCCACCACCCAGATTGCAACAGTGCACTTACGCACATGCAGGACTGTGAAGAGGAGATGAACGGCATTGTCACCACCATTGCCAGTGATTCCAGGCGAGCAAAACGCCGTAAGGACTCTCCAACCCCTGCGTCCACATCGACCCCTAGCGGAGAGCCTGATCTCATGGCCCAAACCCCTTCTCACCCAGAGCCTAGGACCCCGGAGGCCCTGGAGGATCCTCTTAACCGCTGCATCAGAAGCCTGTCCCTCATACGACAGATGCTCCGCTCTGTGAACTGCTGTCACGTGGAGAATCCACACTACATAGACAACTACTCTCGTGTAACATTTCCCCTCTCCTTTATCGTAGTCAACCTGCTCTACTGGACTTACTATCTGTACTTTTAATACGCCTCAGAGTGTTGGTGGGAGTTATGATGAAAGAGGGTGCACCTCATGTCTGACTGAGCATGAAGCGATCTTAGTTTCTGTATATGTCTGGGTTTTTCTTTTGGTTGTTGAAAATCCGAATGGAAGTAACAGTATGCATGatggtgtgagtgtgagagttttttttattttgcattattttacaTGCCTGAGTGGGTGTGCAAGTTCTTCTCACAAATTAACCATTTTGTGGATCAGGTTTGCAATTCTTTTACAGAAACTGCTGAAGGTGTAACATGCTAAAATGATGCAATAACATGCAAGAGAAAGAGGCTGATTAAGATTAAGACATTGAGATGCCATTTGATTTCATCTGCaatgcagaggtgccaacaatatacaagaaaaaatataatataataagggatttttttttttccacaaatccCCTAGCGTAAGCCAGTGAACAAGGTGGCTTGATGGATTAATGATAAAACATGCACTGGctgaactgatatttaactTCAATCTGCAGAAAGGTTTGGATTTTTAAGCAACCAGCTTAGTGTAAATGCTTACTTTATACAAttgttataaaattaaaatgcatgtcCGGTCTTCAGTCCAAACAATTGCCACATGttgcacataataataaatcatctaAAAATGTAGTGAAACCTATTTACTGTTGattaactgacttttttttgtagatCTGGGCATATAGACTTTGATGATCTGTAAACTTTCATAACTGACCTTGAAAGGAAAACGTCATACAAAAGAAACACCTAGTCTGCTCAAAGAGGAACACAAAATACTCTTTGTATTTATCAAAAAATAAGTGCTGTAGGAATATATTAAACCCACAGCACAATACAATGAGCACTTTTATTATTAAGTGATTTGTCTGTCAACCCAGAAAtgcaaaaatttttttaaaaataaaaaagtacattcTACCTAGCACATTTTGCATGAgattatgatattttttttgcagaaaattaTGAACTCGTTTCAATTCCAATTTCAAATTCAGCCAGATTTCTAATTGATCACTTGATACTGTTGAGTTGCACATATCTACTATATGTTAGCTCTGCCACAGTTTTTTCACCTCTCTATATTCCTCACGGGCCATTCAAAATCAGCTAAATTCAGCCTACtgctaccagaagcaaatgtgtttttcacatCTCATGTCTTTTCCCCTTGagagaattgttttttttttccagccaggggaattttatttgcatttggtcAGACTGCTGAGAAAGCAGGAATGCATAGTTTTCCAGTATTGCTGTAGCAATGGTTCAAAAATCTTAACTGCTCCAGCTAAACCGTAGATGTTGGTGCCTCTGCTAATGATTTATCGATATATATTTGAGCATCAACATTTTATAGTATTGTCCTCATGTGCCGCAGACATGTAATGCGTTCTTCCCTTCTTGTCCGTGCATTACCGTGTTTCCAGTTATTGGTTCTGCCAGTGGAGGGATTTGCTCTGAGTTAGTGAGCTGGCTGAAATTCTGGTCAGTGCTACAGGGGGCAAACTGAAGCTATTGCTCTTTTTTATTGCCTCAGTAAAATTTCTGGCCCGggctccctccctctctcacacattaTGAGGATCAACTCTCAGCGCAAGCCAGTGTAAATCGTTTTATATGATTTGgtattaaattattcattatgtAGTCCATTTTACAAGCAGGAAAAGTGCCAAGATCATGTCTGGTTGCAGAGAAACGGTACAAACAGGAGCTTGGGGACCACCTTACAGTATCCTCTGTACCCTTGACAGGGGACTAGATTGCTTGGACAGTTAGGGACACTTTGTGTTAGTAAATCACTTCTTTAGGAAGCTGTataattttgcaaaatttacatttacacttacatttatggcatttggcagacgcccttatccagagcgaattacaaaagtgctttgaagtatataaaaaatacattctgataataataaataaacatggatTTGTGGCACTGTGTGATATGAGCCCTGCGACAAGCCTTGTAAGATTTGATCTAAACAATAAGATATACCTAATTAATACATACTGCCTTATAAGGGTGAAACTGGAAGAGAAAAACAGCCAACTGCAACATTCTCCCTTTTTAGCAGACAAGCAAACAAGTGTTTGATTTTCTGAATGGCATTAATATTCTTCTACAGTTGGATCTCCCAGCACAGATTAATCTTTCTGTCCTAGGCAGAGATTGCCTCTTAAATGTGGCACCCCTCCGAGATTTAGTCCAACCATAAGCCTTACCTGCAGCACGTTAAAAAAATGGCCATATTGATTATATGAAATgtgaagcagataaaagaggATGACTGACtaaagatgtgacagctgttcATCCTGTTAAGATTAAAGGACAGCACGGCAGCCATACTAAAATTTCAATCAACTTCTAAAGAGCTCAACATCGAGGTAGGAGCTTTCACTTGGCATTCATTTACCCCTACCCCCACCCCACTAGATGTGCTTgattcatgttttttcctttctggCTTTACACAATACATGGCAATACATAATGTTATGCcacatattttatgtttattaatatatgtaATTTTAAACTGTATACATTTGTAAAAATTCAAAGGAAAAAATGGTATCTACTGTAGGCCATCCATGcttatataatgtaaaatacatttgaaaatcaTGTCTACAATATGGATTCATGGACATTTTAACAATAATCTTTTATGAGGTAAACAGAATTGAATGGAActccattttaaaaagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52647 lncRNA downstream 207284 11387206 ~ 11387946 (-) True G44582
TU52327 lncRNA downstream 614935 10978646 ~ 10980295 (-) True G44275
TU52326 lncRNA downstream 616807 10974819 ~ 10978423 (-) True G44274
TU52323 lncRNA downstream 638738 10953505 ~ 10956492 (-) True G44271
TU52312 lncRNA downstream 669972 10922309 ~ 10925258 (-) True G44262
TU52906 lncRNA upstream 196438 11839452 ~ 11839822 (-) True G44818
TU52909 lncRNA upstream 269196 11912210 ~ 11914029 (-) True G44820
TU52938 lncRNA upstream 364812 12007826 ~ 12008029 (-) True G44848
TU52939 lncRNA upstream 367917 12010931 ~ 12021468 (-) False pwwp2b
XR_004577842.1 lncRNA upstream 598595 12241609 ~ 12242121 (-) True LOC117596852
XM_026943850.2 mRNA downstream 28990 11389875 ~ 11566240 (-) True LOC113544831
XM_026943857.2 mRNA downstream 92005 11389875 ~ 11503225 (-) False LOC113544831
XM_034303151.1 mRNA downstream 156622 11389875 ~ 11438608 (-) False LOC113544831
XM_034303120.1 mRNA downstream 222243 11330964 ~ 11372987 (-) False LOC113544651
XM_034302556.1 mRNA upstream 128993 11772007 ~ 11786635 (-) False valopa
XM_034302555.1 mRNA upstream 129122 11772136 ~ 11786635 (-) False valopa
XM_026943119.2 mRNA upstream 129237 11772251 ~ 11786635 (-) True valopa
XM_026936509.2 mRNA upstream 174714 11817728 ~ 11973505 (-) False LOC113540195
XM_026936515.2 mRNA upstream 174714 11817728 ~ 11973505 (-) True LOC113540195
TU51003 other downstream 2366346 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 2741436 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 2741436 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 2811432 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 3124801 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 65600 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 501881 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 881622 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 888429 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 988799 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile