RNA id: XM_026933147.2


Basic Information

Item Value
RNA id XM_026933147.2
length 1844
RNA type mRNA
GC content 0.52
exon number 6
gene id tnip2
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 4495632 ~ 4500384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTGGAGCTCAGCGGTGTGTGTGAAGGAAACATACAGCTGTTAGGTTCTGAGGTAAAAGAAGGGCCTCAGTAGAAATGACTGTATAATAAATGggttttaaaattcattaaactgaaattaaaaggTGAAAATATGGAGGAAACTACAGACTAGTTTAACGAGAGCTTTCCTTCAGTCCAAATCTCTTCCTTTACACTTGAACTTGTATTAAACTGCAGTAAGTGTACAAGTGGCAGCTGTGGAGCAAGCCTCGAACAGGGAAGAGGAAATGTGTCTGTAAACGTAGAAAGTAAAGTCCAGATCTGTGACTCGACAGTTAGCGGAAGAGCTGTACATTCAGCCGCGTAAAAAACCGAGCTGTCATGTGTAGAGAAGCTGGCGGCTGGGAGTGAAGCTCTAGCGCCGTGTTGGTGTGATGGCGGAGGGGGAAGTCCCTCAGGAAATCCCCGCACGGCCAGCACCATTTCCAGCCTGAAAACCTCGCCGCTTCTCAACTTCTCTTTACAAAGCTAGGAGCCCGTCGACACCGACCTGAGGACAAACAGTGCATATTTATGGAGTGAAGAACAGGTAGAGGCTAAAAACGgccattttgaaagaaaaaagaagaaagacgAGGACATTTAAAGATGGACGACGACGTGACGAAAGTGCGGAGTTGCGCCACTTTGAACACTTTTTATCACGAAACCCAGCAGGAGATTGTTAACTTAGGCAAAGAGATTTCATCCCGAGACGGAATTATAGCTGAATTAAAAGCCAGGCTGGCTAAATACGAGAGGACGTGTGTGCTGGTTGAGGGAGAAGAACCGTGTTTGGTTGGACCTTCCAAGTCTCTAGTGGAGAGTTTGTGTAGAGAAAACTTCAGACTGAAGCAGAAGCTGAAAGAAGCAGAAGTGGACTCGAGCCAGAAGCTGGAAACTAGCAAAAGAGAGATCCAGAGCCTGCAGCAGAAGCTGAGAGAGAAGGAGCAGATGATGGAGTGGCCCGAGCACGAGAAGGAGCGCGAGATCCAGCGCCTGCGAGCCAACCTGGCAGCACGCGACCGGGAGCAGGCCACCCGGGACGTCCTGTGCAACTCGCTGGCCGATGAGGCAGAGCAGCTCAGGGGGCAGCTGGGAGCCACagtgcgagtgtgtgaggagCTACTGGGAAGGCTGGAGAAGCAGAAGAACCTGCCGGCCATCGCGGAGCATAAGACCCAGGTCAATGAGGTGACCGAATCCTCCGAGACCGCTCGACTGAACAGCATAATCGATAAGTTACAGGAGGAGAACCAGCAGCTCAAAAGCAGAGTGGCATACGTGGAAAACCTGAACTCAAAGTGGCAGAAGTATGACCTGAGCAGGGAGGAGTATGTCAGGGGCTTGTGTCAGAAGCTGAAGGAGTCCAGCAGCGGGACGGCGGCAGGAACCATGACTCTGTACCAGCAGGAGATCAACCGTCTCAATGGACTTCTGGAGGAGAAGATGCTGGAGTGCGAAAGGCTGAGCCGAGAGAGGGACGATCACATGCAGAGAAACAAGGAGCACATACAGATGCTGGAACAGCAGGTCCTGGCTTACATCGAAGACTTTAAGTCAGAGAGAGCGGACAGGGAACGGGCTCAGAGCAAAATCCTGGACCTGCAGGACGAAGTGGGGCGTCTGCAGCTGCAGATCCGAGCGCAGGCAAGTCAAATTCCAGAGAAGCTGCCCCAACACGGCGGATCCTCCCCAACTTAAAGAAAGCAAGCCGTAAGCAGACTGAATCGGTCGAGCCGCTATTGCGAAACAGCCCCCCGGACTCAAGCGCCAGGCGGCCGAACGCTCCGTTAGCAGCGTCTGGTGCGTCCGAGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577882.1 lncRNA upstream 64765 4427999 ~ 4430867 (+) True LOC117596893
TU48135 lncRNA upstream 80836 4414586 ~ 4414796 (+) True G40665
TU48112 lncRNA upstream 206203 4284700 ~ 4289429 (+) True G40644
TU48051 lncRNA upstream 266010 4229392 ~ 4229622 (+) True G40592
TU48050 lncRNA upstream 267084 4228182 ~ 4228548 (+) True G40591
TU48185 lncRNA downstream 43110 4542609 ~ 4545083 (+) True G40704
TU48291 lncRNA downstream 170255 4669754 ~ 4670544 (+) True G40804
TU48292 lncRNA downstream 171368 4670867 ~ 4671470 (+) True G40805
TU48293 lncRNA downstream 172129 4671628 ~ 4671901 (+) True G40806
TU48294 lncRNA downstream 172633 4672132 ~ 4672444 (+) True G40807
XM_026942823.2 mRNA upstream 8357 4483548 ~ 4487275 (+) True scpp1
XM_026944471.2 mRNA upstream 654770 3838726 ~ 3840862 (+) True hmgb2a
XM_026944688.2 mRNA upstream 661006 3831867 ~ 3834626 (+) True LOC113545357
XM_034302875.1 mRNA upstream 661006 3831958 ~ 3834626 (+) False LOC113545357
XM_026933871.2 mRNA upstream 689803 3802564 ~ 3805829 (+) True hand2
XM_034302676.1 mRNA downstream 164817 4664316 ~ 4771604 (+) True nr3c2
XM_026934517.2 mRNA downstream 167553 4667052 ~ 4771604 (+) False nr3c2
XM_034302684.1 mRNA downstream 383497 4882996 ~ 4892379 (+) True prmt9
XM_034302686.1 mRNA downstream 383497 4882996 ~ 4892379 (+) False prmt9
XM_034302685.1 mRNA downstream 383497 4882996 ~ 4892379 (+) False prmt9
TU47789 other upstream 661021 3831949 ~ 3834611 (+) False LOC113545357
XR_004577910.1 other upstream 2329848 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 2404326 2085465 ~ 2091306 (+) False stox2a
XR_003404319.2 other downstream 764083 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 819035 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 2704451 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 3149699 7649198 ~ 7666033 (+) False naa15b
TU50445 other downstream 3966248 8465747 ~ 8466312 (+) True G42685

Expression Profile