RNA id: XM_026933185.2


Basic Information

Item Value
RNA id XM_026933185.2
length 4037
RNA type mRNA
GC content 0.52
exon number 4
gene id synpo2la
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 10244156 ~ 10253087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAGTTCAGAGAATGAGTGCAGGGCCTGAGTGTGACTTTGTGTGACTCAGGCTGGCAAACATAAAGTCATCTCAGGAATATTACTGCAGCAGTAGGATGAGTGCTCTTTCCTGAGGGCACCATGTAAAGATGAAGTGAGCGCCCTCTTCCCCTAGACCTACACCCTGAATCCAGGAGGCAACAcagaagcatggtggtggaggaaaTCACCATTACGCTCTCCGGTGGAGCGCCATGGGGCTTCAGACTTCAGGGAGGTGCAGCGCACCAGAGACCACTGCAGGTTGCCAAGGTGCGCAAGCGCAGCAAGGCATGCAGGGCAGGACTGCGAGAGGGGGATGAGCTGGTGTCCATCAATGAGAACTCCTGTGAGCATATGTCCCATGCTCAGGTCATGAACTTCATTGATAGCATCCCTGGATCACTGCGCATTCGAGTAAAGAGGGCACCGGCTGGATTCCAGTCAGTGGTTCTGGTGGCCCGAGCTCCTTCTCCCCGCATCGATAAAGAGTACCGTGCTGCCCTAAGGGCCAAATCCCCATCCAGCTCCAAAATGCAGCAGTCTAGTGTTCGACAAGCGTACTACAGTTCACCGATGTCCCAGACTGTCCGTAGTGGCGTCACCTCCCCGTTTGGCAGTGAGGCCTActatggagagacagacagtgatgCAGATGTGGCAGCCCATGACCGTCATCGTAAGCAGAAGCGCCGCAGTCCCAGTAACTCCCCAGGAAAAGCAGGCTACACTTCTCCCGAAATGGGAGAAGCCTCTGAGATGAGTGGTTATGACAGTGCACCAGATGTCCAGGGCTACACCAGGATGGGGCATGGCTCTCAGGAGGGCACCCTGCCTGGTGTGGTTCGCCGAGAGGTGGTGTACCAGCCCCCTCCATCTGGAGCCTGGTCCTCCCAGACCTCAACTGAGACCTCATCCATGAGTGCAGATGAGCAAAGTTCTCAGGACCTTGTATTGGAGGAGGACAGTGGGTTCCAGGAGCCTGCTAACGTACCACTGGTGTCTCCTGAGAGAGCAAAGGGGGCACTGCGGCTGAGCTCCCATAGCCAGTTGGTGCCCATGGTGGGGCCAGTTGATAAACCAGTGGATGAGGAGCTCACAAAGACCTACATGGATAAAGCAAAACAAGCCAAATTGAACCGTGGTGAGACACCGCAAGACAAGCAGGTGAAGGAGGCCCGGAAAAAGTGTCGCACCATTGCCTCTCTGCTGACTGACGCACCTAACCCCCACTCCAAGGGTGTTCTGATGTTCAAAAAACGCCGTCAGCGCTCCAAGAAGTACACATTGACCAGTTACGGTAGTGTAGATGAGGACATGCAACAAGACTCTCAAGAGGAGGACAGCCACTTCCTTGGAAGTGAATCTGAGGTGGATGAGGAGGAGTTCAGTGCAGCACCTGATCCCACATGGGACAGTGGCTATCTGGATATTCTAGAGAAGAGATCAGCATCTAGAGGCTTGGAAGAAAATGAAGCAGAGGATTCTCTGAGCACTGGCCTGAGTGACACCACAGGGAAGGGGGCAAAATTGTTTGAGCAGCAGAGGAAGAGAGCTAAGGAGCATGCCAAGAAGATTTCTATTGCTCAGGCACAACCGAGTCTGATGCAGAGCCAATCCCAGCCTGAAATTCAAACACAAGGAATACAGACACAACCATCAAATTTGTCTGTACAGGTAAAAAAACAAGTGAAACTCAGTGTCCAGCCACCACCAGTTGCACCAAAGCCCACCAAACCACCAGAGCTGTTGATGCAAGAGGAAGCTTGTGCTTCCAAGACACAAATCACAGGATTCCCACCTCAAGTAATCCCTTTCACTGTTAATGAGCATACTGCCAGCATACCAGTACCAGTCCATAGCCTGGTGCCTGTAACAAACCAACCAATAACTGCTGCATTGGCTAAGATGCCTCCACCAACAGCTCCTCTGCCTGAGTTGCCAGCTAGCTCGGTGTTGAACCGCACAGCTCGTCCATTTGCCCCCGGTTTCATCAGCCACAGAGCAGCTACAGCACCAGTCATGTTTCACCCTACCACTGCTAAAAAGACTCCCAGACCAGTCTCAGTGGCAGTGGTGGCCCCTCCTTTCTCAACACcatctgatcagaaggttataGATGTACCTTCTGCCAGTTTCACAGTGAGCCAGATGAGTGCTATTGTTCCTGCTGAGGTGTCCTCCATATTAGTCTCTGTGCCCACTGACCCTCTCTCATACTCTGCTATAGCAGATCCTGCAGCCTCCCTTACTCCACATCCTCCTTCATCAATGGAGAATATTCAGCCTTCTATCCCACAGACTATAGTGCCGGATTCCTCTATTCCTGCCAGTGGCATTACAGCTACTCCTCCTGCTAGTCTCACAGATCCCACTACCATAGCCTCCATTGCATCCTCTCAATTCACAGCTCCTGAGTCTTCAATGATACCTGATGCCCCCATGACTTCTGCAGTTCCTGCAAGTCCTGTTGGCTCAATGACTCCTCTATCTCCTGTAGTGTATCAAGAGAAAACCACAGAGATAGCTCCTGCAGCTGGTGGGAAAACTGGCATCCTTCAGGAGGCTCGTCGCCGTAGTGCCAGTAAGCCAATGTTCAAGGTGTTTGACAGCAAGAAAAACTCACCCAATCCTGAGCTGCTGTCTTTGGTGCAGAATTTGGATGAGAGGCATAAGCAAGCATACACAGAGCCTGTCTCTGTCACTCAGGATTCATACAACTTTGATGACAGAAGGGGACGGCTCGCACCACCAGTGGCTCCTAAACCACGCATCATCCCAGAGATGTCTCAGATTCCACAGGCAGAGGGTAAAGGTGCTGAGCTATTTGCAAGAAGACAGAATCGCAGAGATCTCTTTGTGATAGATtctcctccatcacacactcagcagcagcagcagcagcagcagcagcagtataCACAGCCCCAGTCTGCTATGGCCATGATCCATCCATGTGAGTCTTCACCTTGGAAGTACTCTCCAAATGTCCGTGCTCCCCCACCCATTGGGTACAACCCTCTCCTGTCCCCTTCTTGTCCCCTGGGATTACAGCGTGGAGGAGCAAAGGCTTCTGAAAGAAGCTCCAAGGTGGGTAAGAGTGGTCATGGATTCCAGAAGGAAGGTATCAAGGCTATAGACTTCATAAGGCGGCAGCCTTATCAACTCAACTCAGCCATGTTCAGGTTTGGAGGTGACTCAAGCAAACAGTCCTTAGGTCCCTCATACCAGAGGCAGCCACAGGTGGGTCACACCTTAACCCAACCCAGGCAGGTACCCGTGAAGGCAGCACGTGTGTATGAGATCAAACGCTTCTCTACTCCTACTCCTATGTCAGCTCCAACGATAAGCCCCACAGTGATTGCTCCACGTGCACAAACCACTCTGGCTGAACCCCTGTTTCATTCTGACATGACCTCCCCTACCCCAGCCACTGCTTCCCCTCCACCTCAGCCTGTACCTGTAAATACAGCCATGTCTGCACGAGCTCCAGGTTTGCCAGACCTCCCTAAAATCTCTGCCACTCCCATATTTCTTCCTACTCCATACTCACCCCCAGATTCTCTATCCAGCGTGTCAAGCATAGGTTGCCATGGTCTCCAGGCTACCAAACAGTTCAAGAGTGCTCCTGAGCTTAGCTCCCTGCCACCAGTCCCCCTGAAGCCTACAGTCCAGGCACCCAAGCCACGCTTTATTGCTACACGGATGGGCATACAGCCTCATGTCTGGAGGCCTGGAGCTCTGTAGAAATGAGTGTGACATTAAAGAAAGGATGAGCTCAATCCTTATCGTCATTCATACAAACAACAGTTCAGATACAAATACTGGGCAAAGAAGAGCAACAACAATTGTATTGGTTTATTTGGAGCAACATGAAACAGACAAAACTTTAATAATTGTGGCAAAAattgactgtgccccaggccttcttgccTGACAgtaatgcctgacctcactaatgctcttgtggctgaatgggcaaattccCACATCCaggctccaaaatctagtggaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51888 lncRNA downstream 1274 10241941 ~ 10242882 (-) True G43910
TU51773 lncRNA downstream 82654 10158929 ~ 10161502 (-) True opn4a
TU51754 lncRNA downstream 116525 10127414 ~ 10127631 (-) True G43790
TU51751 lncRNA downstream 127440 10115935 ~ 10116716 (-) True G43787
TU51707 lncRNA downstream 212081 10030568 ~ 10032075 (-) True G43749
TU51966 lncRNA upstream 637 10253724 ~ 10253938 (-) True G43978
TU51974 lncRNA upstream 12269 10265356 ~ 10265588 (-) True G43981
TU51975 lncRNA upstream 37980 10291067 ~ 10305082 (-) True G43982
TU51991 lncRNA upstream 62638 10315725 ~ 10316448 (-) True G43987
TU52133 lncRNA upstream 400627 10653714 ~ 10655844 (-) True G44103
XM_026941996.2 mRNA downstream 3373 10234757 ~ 10240783 (-) True myoz1a
XM_034302776.1 mRNA downstream 11075 10165718 ~ 10233081 (-) True usp54a
XM_034302777.1 mRNA downstream 21953 10165718 ~ 10222203 (-) False usp54a
XM_034302778.1 mRNA downstream 21954 10165718 ~ 10222202 (-) False usp54a
XM_034302774.1 mRNA downstream 21954 10165718 ~ 10222202 (-) False usp54a
XM_026941011.2 mRNA upstream 2538 10255625 ~ 10318195 (-) False camk2g2
XM_026940966.2 mRNA upstream 2538 10255625 ~ 10318195 (-) False camk2g2
XM_026940948.2 mRNA upstream 2538 10255625 ~ 10318195 (-) False camk2g2
XM_026940931.2 mRNA upstream 2538 10255625 ~ 10318195 (-) False camk2g2
XM_026940922.2 mRNA upstream 2538 10255625 ~ 10318195 (-) False camk2g2
TU51003 other downstream 1015272 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1390362 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1390362 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1460358 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1773727 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1455527 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 1891808 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2271549 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2278356 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2378726 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile