RNA id: XM_026933253.2


Basic Information

Item Value
RNA id XM_026933253.2
length 3200
RNA type mRNA
GC content 0.51
exon number 13
gene id galntl6
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3877190 ~ 4089518 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACGCGCGGTATAACGGCGAGTCTCGCGCTCTCCCTcgcgctctctttctctctctctctctctctttctctctctctcccacaacACAACAACCTGCACTCCAGGGtcggagaggagaggagaggattCGCCCGCGTGCTCGGGAATGTTTTCATACGCATGCACGTGCTGAATAACGGATTTATCAGACGGGAGCTCGAGCGAAGGAAAAaaggcggagagagagagagacagaaaataataataataataatattaataacattaacgGAGACTTGCACCGAAGACgctgctctctcacacacacacacacacacacacacacacacaccgcgcgCGCAAAATCCTTTAAGAGATGAGCGCGAGGCTTTTTTGAATCCTTGCGCGAGCGCGTCGCAGCCGGCGCAAGCCGTTGGCCGTTGGGGAATTTAAACTgtaacggaaaaaaaaaaagcttccgttattttattttattttatttatttatttatatgtttaaattttAGCGTCGCGaccataaaacacacagaaggACTACAGAGAAAcgctgtctttgtgtgtgtgtgagtgtgtcatcATGAAAATACGCCTCTACAgggaAAGTTTGTCGTCACCCGCCGAACAAGCAGCTTGGTGTGACTCctcagagctttttttttttctttttcccatctGAACTGAAATAAGAACTGGAACCGGAAGTTTAACGATGAAGAGGAGGCAGAAGCGCGTGCTGCAGATGGCGTTTTTATTCACGCTGGCTCTCATCTTCTTGCCCAACGTGGGTCTGTGGTCCCTGTACAGAGAGAAACACCTGCTGAAGGCTCATGAAGGAGACGAGCAGGGATTTGCGCTCGGACTGAGTGATGGACATGTTTACAGCTGGACAGACGGCTTGAGGAGGAGAGACTGGCACGATAACGAGAGCATCAGGAGAGACGAGATGCGTGTCGggAAAGGAGAGCAGGGGAAGCCATACCCACTTGCAGAGGATGAGTGTGATGACTCTGTGTACAAAGAGAACGGCTTTAACATCTACGTGAGCAACAACATCGCACTGGATCGCTCGCTGCCCGACATCAGACACCCCAACTGTAAGCAGAAGCTGTACTTGGAGAATCTCCCCAACACCAGTATCATTATCCCGTTCCATAACGAGGGCTGGAGTTCTCTTCTCCGCACTGTCCACAGCATTGTAAACCGAACTCCAGATCACCTGATTGCTGAGATCGTTCTGGTGGATGACTACAGCGATCGAGAGCACCTGGGTGTTCGTCTGGAGGAGTACATGTCCAGATTTCCGAAGGTGCGGATAGTGCGCACTAAGAAGCGCGAGGGTTTGATACGCACGCGCCTCCTGGGAGCGTCCGTGGCTAAAGGGGAAGTCCTCACCTTCTTAGACTCGCACTGCGAAGCCAACATCAACTGGCTGCCTCCTCTGCTCGACCAGATAGCCCAGAACCCCAAGACCATCGTGTGTCCCATGATTGACGTCATTGACCACAACCACTTTGGCTATGAGGCTCAAGCTGGGGATGCTATGCGAGGAGCTTTTGACTGGGAGATGTACTACAAACGCATTCCTATCCCTCCTGAGCTCCAGGGACCTGACCCCAGCGACCCTTAcgagTCTCCAGTGATGGCCGGAGGTCTGTTCGCTGTGAACCGTCAGTGGTTCTGGGAGCTGGGAGGCTACGATACGGGCCTGGAGATCTGGGGAGGAGAGCAGTATGAGATTTCCTTCAAGGTGTGGATGTGTGGAGGCAGTATGTATGACGTGCCGTGTTCCAGAGTGGGCCACATCTACAGGAAGTACGTGCCCTACAAAGTGCCCTCAGGAACGAGCCTGGCCCGAAATCTGAAGCGGGTGGCAGAGACATGGATGGATGAGTACACAGAGTACATCTACCAGCGGCGGCCGGAGTATCGGCACCTCTCCACGGGAGACCTGACCGCTCAGAAGGAGCTGCGCAAGCACCTCAAGTGTAAAGACTTCAAATGGTACATGAACACGGTGGCGTGGGACCTGCCCAAATACTACCCTCCTGTAGAGCCCTTACCCGCTGCCTGGGGAGAGaTCCGAAACGCAGCGTCGGGGTTGTGTATCGACTCCAAACACGGCTCGACAGGAACAGAACTCCGTCTGGACAGCTGCCTGAAAGAGGGAGCCGAGAGAACCTGGGCACACGAACAGATCTTCACCTTTGGCTGGAGGGAGGACATCAGGCCCGGGGACCCTCTGCACACCAGGAAGTTGTGTTTCGATGCCATCTCTCAAAGCAGCCCTGTCACTCTATACGACTGCCACGGCATGAGGGGCAACCAGCACTGGAGCTACCGCAGgGATAAGTCTCTTTACCACCCAGTGAGTAGCGGTTGCATGGACTGCAGCCCCGCCGATAAGCGAATTTTCATGAACAAGTGCAACCCTGAGTCGGCAACGCAGCAGTGGCTCTTCCAGAGAGTCAACGTCACCATTCTGGACAAATTCAACAGCGCCACCACTTCCTAGGACCCTCAGAAACACAGCCAGCCAGTGGACTGGCTCCCAGAATCCTTAGCGAGGGGGGTAGATTTACTTAGTGTCTGAGTGTGGCCCCCCCTacctcctccccctcctcccaAATGCCCACAAGTGCAGGAGCAGACGAGGAAGGGGCGGCTCGTGAGCGAGGGAATTGGGATGGGGCCGAACCTGGAAGACTGATGGGACACTCAGATGGCTTGCAGGTTAAGGAGAACCTGTTAACAgccaacctctctctctctctctctctctctctctctctctctcactctctctttctgtctttctctcgtTCTTTTTGCAGCTTGGCCCCAGTCATTTCTAACTCACCGAACAACAGTGCTCTGTTTAAATATTGTTCCTCCTCACTCTATCGATATCGCATGGTGGATTTGTACTATACCAGAGACTGGAAGTGACGTTTTAGCATCTCTGTGTGGTTCTGAGGAGGTTTGTTCgaactgtatatttatttctatttatttggtCGTATTTTTGCGAGGATAAGTTATTATGTGTGTAATTGACTTTGTTTTACCTCTACCAAGGGTAAAGCTAGAAATCAGATTTGCCCCACGGAGTTGGAGATGACAGGAgtaaatgttttcctttttttcacagAGAATCATGCCCCTTCCTGCCCCAGTTCCTACCatttaaattctaaataaa

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47974 lncRNA downstream 36030 3792229 ~ 3841160 (-) False G40522
TU47975 lncRNA downstream 36030 3810868 ~ 3841160 (-) True G40522
TU47972 lncRNA downstream 36248 3838818 ~ 3840942 (-) True G40521
XR_003404606.2 lncRNA downstream 39008 3819051 ~ 3838182 (-) True LOC113545372
TU47763 lncRNA downstream 164357 3702221 ~ 3712833 (-) True G40323
XR_004577552.1 lncRNA upstream 399029 4488546 ~ 4496696 (-) True LOC117596430
TU48257 lncRNA upstream 448542 4538059 ~ 4539526 (-) True G40770
TU48440 lncRNA upstream 576005 4665522 ~ 4665725 (-) True G40936
TU48442 lncRNA upstream 577689 4667206 ~ 4668993 (-) True G40938
TU48466 lncRNA upstream 649867 4739384 ~ 4739711 (-) True G40962
XM_034302839.1 mRNA downstream 7426 3843479 ~ 3869764 (-) True galnt7
XM_034302840.1 mRNA downstream 7426 3843479 ~ 3869764 (-) False galnt7
XM_026931975.2 mRNA downstream 177670 3683443 ~ 3699520 (-) False cep44
XM_026939659.2 mRNA upstream 140305 4229822 ~ 4248823 (-) True LOC113542265
XM_034303190.1 mRNA upstream 140305 4229822 ~ 4231753 (-) False LOC113542265
XM_026939705.2 mRNA upstream 170214 4259731 ~ 4274167 (-) True LOC113542293
XM_034303192.1 mRNA upstream 194858 4284375 ~ 4289439 (-) False LOC117596921
XM_034303191.1 mRNA upstream 194858 4284375 ~ 4289438 (-) True LOC117596921
trnah-gug_3 other downstream 842637 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 843253 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 844387 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 1703439 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 1897659 1977326 ~ 1979531 (-) False lgi2b
XR_004577883.1 other upstream 456067 4545584 ~ 4609450 (-) False dclk2a
TU48529 other upstream 1114189 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 1135513 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 1667194 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 3071957 7161474 ~ 7204151 (-) False lef1

Expression Profile