RNA id: XM_026933310.2


Basic Information

Item Value
RNA id XM_026933310.2
length 3534
RNA type mRNA
GC content 0.45
exon number 21
gene id LOC113538327
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22300917 ~ 22317379 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTTAGTAATGTAACGAACATCCTATTAGCCTGTTGATCTTttctaactaaaaaaaaactgtaaaattgaTTTCCCAGAATATCCTGTCAATTGACAATATCAGCAATATTTATGGAGATGTTGGAAATACACATAATCCTTTCACATGCTTGAGGAGCCTCCTAAGTGCGAGAAGAGACTGGAGGAATGTGACAGTAAGTAAAGAATGGCCTGTCAGTGATGGAGAACTTTAGTCACTAACATGATGCCTGTGAGTGATCTACCCCAGACCTCTGCTctggtgtgtaaggtgtgtttCATGTCAGGGATAATTAGCAAAGAAATATGATTCATATCAGAATGGATCATGTATGTATGTGGGTCATTGCTGATGCACATGATTATCACAGTGTTTACCTGGTGATTAAATGTGCTTTAAGACATGCAGGAGCAGATAAAGTTGTCATAAACACAGCTCTAGGCTTTGGCTTGTGTTCTTGGCCTGTAACCTCTGCTCTTATCAAACACTATGAGATAAATCCTGTTACAGTGCACTACAGTAGGTTTTATGAGTTAAGGGCAGATGGACTGTTGTGTAATGAGTACATGAGCATACTTTTACGATTCACTGGCTAGAGGTAGCTGAGGAACAGACCATGTGAATACAAACACAAGTGGAGTTTAAATACCCTGAAGGTCACACGACttacaataaatatacatactgGAGAGTCAAAACAGCAAAGTAACTCAGACTTCGCATGTGGCAAGTGTCTGAAGGCAGTAGCAGTGAGTCAGTGAAGGAGAGATCCAGATCAGTGCAACAGGACCAAGTATGAAGAGAGTGAGTCGAGTCTCTCCCAGTGGCCATGAAAACCCGGGTCTGGAGCTTAGTGATGCAGCGTCCAGCCAGTCAATGCAGCAATATACTGGTCCGTGTACCTCAGTAATGTCAGCCTCAGTGGTGCGCTCTGTTACCCAGTGGGCTTCATATGCCCGGGGTCGCTGGAAACGGGCTACCCGTAAATGCATGAGGAGAAAACCCTCAGGGGAATCTTTAAGCAGCAAGTACAAGGGCCTTGCCTGGGAGGAAGATGTTGTAGATGGAGACGCCAAAGAGCAGCAGTTGAACAAACGTCTGCTGGATCACTTCAGAGTGCTGGCTGCCAATAACGAAGACACAGATGAGGTTGACCTGCAATTCCTGAATGAAATCCTTAGAGACGGAGCTGATCCCAATTCAGCAGACAAATATGGACAGACAGCACTTCATGAGATCTCTCGAGCCTGGAATGTAGATGTGATGAGGTTCTTCCTGGAGAGAGGTGCTGATATCCGCAGGCCTGATGCATTTGGGGTTACGCCTCTCCACGTGGCCGCAGCCTTGGACTATGAAGATATGATTCACTTTCTACTAGAAAGAGGAGCTGACATTGAGGCACACACGTATAAAGACATGCAGACACCATTACACTTTGCTGCTAAGAACGATGCTACTGAGGCAATTCAGGTTCTGCTGCGGAATGGAGCAGACATTACTGCACACGACTACAAACAAAGAACTCCACTACAACTTGCTGTCAACCTAGATCGCAGTgaagctgcacacacactgttggaGCTGGGGGCGGATGCTGGGGTTCAGGATTCTGATGGACAGCTATGTATCACTGCCATGATTGGCAAGATGACGCCCGTGGCCAATCTGGCACTGAATCAGTTTCACGTGAAAGACCGAATGACACGCCAGCAGTTCTTCTACCTTCATCTGCTGGAGCCAGAGCGAACACGCCTGAAAAAATCACACGGGAAAACCAGAAGTGAGCCGACATCACCGCTAGAGTTTATTGTCCAACAAGGGAAACTGGATCTCATTATGCATCCTGTAGTGTTAAAGCTCATCACAGTCAAATGGAACCTGTATGGAAGACTTGGTGCATGGATTCTCCTGCTgctcaattttttatttatcgtTTCCTGGACCACAGTGGCCATATCTGTGTCCGTGTCACCAGAGGAGGACAAACGCTATGTTTTCCCTCAGGACTGGTGGcgtgtgtttgtggtgatgaTAGCGTTAGGGCTGACGGTGCTGGAGGTGTACAGGGAGGTGATGGAGATTCTGCGCTCTGTTAGAAAACTAAAAGATTGGCAGCAGTGGTGTGAAGAGAGACTCAATGAAGATCTGGCTTGCACACACCCCATGTGGCCAGAGGAACGTCACTACTTCGAGGGTCAGATTAAGTTCATTCGCAGCTTGAAGGGAAGCTACTTACAGGACCCCTGGAATATATTTGATTGGCTTGTGTACGTATTGCTGATAGCAGTTTTGGGTCTTCACTTGGCTGATGTTTACCTGGTCTCTCAGACACTCCGAATGTATAGCCTCCGCATCTTCGCTGTGGCCGTCATCTTCATCTGGCTCAGGCTGATGAAGCATGTCAGGGCATTTAGGGTTATGGGTCCcttcattgtcatgctggggAAGATAGTGGGTGACGTGCTCCGCTTCCTCTTCTTATATGCAGAGATCTATGTCCCATATGCCTGTGCTTTCTGGATTATATTTGGAGGCTTAACAGCTGTACCTAGTATGCAAACAGTGCCGCAGATGCTCTATAGCCTGTACCGGATAACCCTTGTGGACGAGTATGAGTTTGATGCCATGGTGGCTGTGGACTCTGTTATGGCTCACTTGCTTTGTGGTACATTTCTGGCCCTGTCTGCTGTTCTGTGTGTCAACCTGATGATTGCTCTGCTCTCAGACACCTTTCAAAGAGTATATGACAATGCACTGGCAAACGCAGTGATGCAACAGGCCTCCATCATCCTGCAGGTAGAAGAATCCATGCCTCACCTGTGGCATTTCTATGACAAACAGTATATCCACAGCTGCTGTGCCCCACTCAGAGAGTTTTATGATGATGAAATCATAACAGATCCAGATCAGCATGAAGAGATGAAGAAACTTACAGCAGAGATTAAGGATACATTGGATGAGTACTTGACCATCCAAAAAGAGGCCAAACTACTCAACCCAGCTCAAACAGATGATGGTAACAGATCTCCCAGATGGAATAGTTTCTCATCTCAACAAGAACATCTCGGCAGTCTAATGAGACTGGAAAAGGACCAACAGCAGCAGATTCAGGATCTGCAAGACCTAAGAGAAGATGTAAAGAAGCTCCAGGGATTACTGCTACAGCTGATTCCGTCAAAGCCTACAACATCTGCTGATGTTCCAAATATATCTTCAGCAGGGCTTCGGTAGGCTGGAACGAACCACGTTTTGGTTTTTGAAGTTGGACAAGAAGCAAGCCCTTTGAAAGATAACAAGCATGTGTTAACTATAACAAACTCTCTAACTACATGTGGGTAATTGTTAAATATTTGGAATGCTGACCACGGTATATTCAGTGCTGGTTTCACTGGTTTTTAACTTGACTTCACTTTAAGAACTTCTAGTTAACATACAGCATGTACTAGGTTAAACTGTGTGTTGGTTTTATCCCTGGCCTACAGGGTTTTATGGTCAATAAATTAGTTTATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU60359 lncRNA downstream 108001 22107092 ~ 22192916 (-) True G51058
XR_004577859.1 lncRNA downstream 123586 22165739 ~ 22177331 (-) False LOC117596869
XR_004577860.1 lncRNA downstream 123586 22165739 ~ 22177331 (-) False LOC117596869
XR_004577858.1 lncRNA downstream 123586 22165739 ~ 22177331 (-) True LOC117596869
XR_004577862.1 lncRNA downstream 136493 22153348 ~ 22164424 (-) False LOC113538981
TU60485 lncRNA upstream 227238 22544227 ~ 22546490 (-) True G51169
TU60484 lncRNA upstream 248810 22565799 ~ 22566527 (-) False LOC113541574
TU60626 lncRNA upstream 288558 22605547 ~ 22608037 (-) True G51276
TU60643 lncRNA upstream 330361 22647350 ~ 22743272 (-) True G51289
TU60768 lncRNA upstream 573070 22890059 ~ 22890274 (-) True G51389
XM_034302709.1 mRNA downstream 1555 22266696 ~ 22299362 (-) True ubr2
XM_034302710.1 mRNA downstream 1555 22266696 ~ 22299362 (-) False ubr2
XM_034302711.1 mRNA downstream 1555 22266696 ~ 22299362 (-) False ubr2
XM_034302708.1 mRNA downstream 1555 22266696 ~ 22299362 (-) False ubr2
XM_026934474.2 mRNA downstream 95942 22180147 ~ 22204975 (-) True pkdcca
XM_026944151.2 mRNA upstream 430 22317419 ~ 22424411 (-) True prkn
XM_034302780.1 mRNA upstream 248782 22565771 ~ 22571868 (-) False LOC113541574
XM_026938634.2 mRNA upstream 248782 22565771 ~ 22571295 (-) False LOC113541574
XM_026938650.2 mRNA upstream 248782 22565771 ~ 22571110 (-) False LOC113541574
XM_026938642.2 mRNA upstream 248782 22565771 ~ 22570810 (-) True LOC113541574
TU60345 other downstream 199534 22035285 ~ 22101383 (-) False LOC113540944
TU60082 other downstream 350728 21949855 ~ 21950189 (-) True G50837
trnai-uau other downstream 404640 21896184 ~ 21896277 (-) True trnai-uau
TU59887 other downstream 686650 21611774 ~ 21614267 (-) False plekhh2
TU58946 other downstream 1931488 20357988 ~ 20369429 (-) False gng2
XR_003404067.2 other upstream 457366 22774355 ~ 22788783 (-) False znf318
XR_003404066.2 other upstream 457366 22774355 ~ 22788783 (-) False znf318
TU60979 other upstream 1130919 23447908 ~ 23454217 (-) True G51576
XR_004577819.1 other upstream 1700275 24017264 ~ 24040100 (-) False mlh1
XR_003404244.2 other upstream 2136130 24453119 ~ 24651847 (-) False lyst

Expression Profile