RNA id: XM_026933324.2


Basic Information

Item Value
RNA id XM_026933324.2
length 3841
RNA type mRNA
GC content 0.45
exon number 2
gene id nkx2.3
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16848352 ~ 16852884 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAACTgctgcaaaacacacagcagcgtCTCGAAGCTCAATGCTTTGACGAGGGGACTGGCCCTGCTCGTCCCTCTGCGCGCGCCTCTGTCGCTCTTCCCCGAAAATGGAAGATTAGTTCACATATCGGGTATGTTTCCATGAAATCTCTGCCTatctaaagtaaatatttttagtaAGACTCAGTGCTTCAGGACGCCAGTTCAGCAGAGCTCATATTCTAGATGTCGCTGAACAGAGCCCGATGATGCTTCCCAGCCCAGTAACGTCAACCCCGTTTTCTGTCAAGGACATACTAAAGCTGGAGCAGCAGTCTCACCACCACCACGGCCAGCCTCTGCACGCGCCCTTACCGGAtttacagcaacaacaacagcagcagcagcagcagcagcagcagcgcttTCACACTCCACCATCTTGCCTGCTTGGAGGCGCAGAGAGCCCCGGATTCTCGGACAGCGAGGACAGGATGGCTTTCCTCAACGCCCTCTCCGTACAGGACAACCTGGTGGAAAGCAGCCTTTCTCCGCCCATGTTTGGCCATCCTGCTCTGGGGCACGTCGTAGACGCAAAGTTAGAGGATGACCTCGAAGATCAGGAAACTAagaGCTGTGGTGCTGCAGTGAGGTCCCCGGACTGTGAGCTGAACTCGGACCCGGACAGAGCTCAGAGGCAGAGAGCCAGGCGGAAGCCGCGCGTGCTCTTCTCCCAGGCGCAGGTTTTCGAGCTGGAGCGGCGCTTCAAGCAGCAGCGCTATCTCTCGGCTCCTGAGCGAGAACATTTGGCGAACACTCTGAAACTCACGTCCACCCAGGTCAAAATCTGGTTTCAGAACCGAAGATACAAATGCAAGCGCCAGCGTCAAGACAAAAGCCTGGAGATGGCTggccatcatcaccaccatccgCCGCCTCCGAGGCGCGTGGCGGTACCGGTTTTAGTCCGGGACGGCAAGCCTTGTCTTTCTGGATCACAGAATTATAACGCTACCTACGCGGTGGGGTCCAACCCGTACGGGTATAATGGTTACTCAACCTATAATAATGCCGCATATACAAACGCCTACAACTGCTCATATCCCAGTCTGCCAACACTCCCAGCAAACACAGGCGCCAACCCGTTAATGTCCATGAGTTTGAATAATCTCGGAGCGCACTCCCAGCCCCAGTCATCACAAGGGACTTCCGTTTCATCGTGCCAAGGACCTCTGCAGGGCATCCGGGCGTGGTAATGCCACAACAACCACATGCCTTCTGTACAGCCTTGAATACGAAGCTTCACGCCAATAGCAATTCATTACATATATTGTATTGTGACTATAGCAGCACGCTCCAGATCAGCAGGGACACTTTACATTTGAGAATGTAGTCTAAAATATGTAATGACGCCAAACCTGTTGATTGCATGTAAATTAAGTTGTTTCTGtgctgaaaataattttttggaTTTACATGAAGTATTAGTTTTTAATGGGTTGACATCTCATGGTATTGCAATATTTCTATACCTTGCGTTGGaccaaatgttaaataaaagtttggACGCTGGGGgatgcatgcacatgcacatcaAAACAGACAACTTCTTTATCAATCTTTACTGCTAGTAAATAACTTGGAATTACAGTACCGACTGCATTAAACTACACTTATGTGGACATCTAGATGCAATGGCTCGGAGTTTACGACCAGACTTTCACCTAGAAAAGGTGCAgatttgcttttaaataattatccTGTTTGATCCTGAGAATAATATTGTATGCAACTCAATTCTTTTGGGCTCTTTTGTTATTGCCTTAAAGTAGGCAAAGTAAGTGTTAAAATCAGCTCGACGTTATCATCTGATGCTCAGTGAAACAtatttgtgaaaatatctttGTGAAAACAGAAGATGGAATAAATGAAGGAACACCAGGCTCCTCACTGGGGTCAATGCATAAAGTTTGCTATAGGCCTGCCTaaggttttcagtcattttaaaagaaagaaagaaagaaagaaagatgtttcCTGCCCCGCCTGTGCATGAGAGGAGTTATAAAATAAAGCCAGTCAGTATATTCGCTCCGATTGGTGATTAAATGAAATGCACTTTGTTTCCAAGCTTCCCAGAGCTTCCCACTGATTCATTTGCGTTTTCGCCGATCGAGCATGAAGACAGTTGTTGTATGGGCTATTTATGTTGAGACAGGCCAGGCGCACACGAGGCCTGCTGACGAAAAGCAGAAGCTCGACGGGGAACTTAAACAGACATAAAGAGTGGACATTAATATCAGCGTTTTGGTAATTCAGCTGGACTCGATTGCAGCTTTGCGATGAATGTGACCTAATGTGCAGTCGATTCATTATAGATGGAGCCTACAGAGTGACTCAGTATTAGCATTGTTCAAATAGAATTATTATCTCTAAAAGAATTCTAGAATAATATGCTGTTGTTACAAGCAAAATATTttggagatagatagatagatagatagatagatagatagatgcctGTCTAGTATTTTCCTTTTATTGCAGTTTCACTCCTGACAGTTTGTTTTAACTATAACGACAAACTTTACTTTAACAGCTCAGTTAAAACGAGCTCCAGGAGAAAACGTGCTACTTGCTTGTTGGGCCATTACAGGCGCGCTGCGTTTATCCTGCAGAGGCTAGCCGTTGCCGAAGCTTTTAATGGAGATTAATAGAAATGTAAACAAAGCGTCGAAAAGACCTTGTCTGCGCCGAAAGCAAGGATGACCACTTCTTCTGACTAGTGCACTACCGGTAGGACATACCTGGTGTCAGGATAAGTGGCCTAGGCCCTTGAGTGTAAATAGCGCTGGCGACAGAGCGGCGATGCCTCGGGACGCCAGGGcgcgttcacacacacacacacacacacacacacacacacacacacactcatgatttGTATCTATGACCAGATAGGAGCCCTTCCATCAGGCTTAGGCTGCATGGAGTTTCCCTAAACACTGGCTTTCTCAGCAGAGTAGTAAAGTGCCAGATAACATTTGACCACACTGTTTCTAAGCCATGCTAAAACTGGAAGACTCTCATTACATATAACATTTGCCATTAATAGTTCAGCCAAGTAAGATTAAAATAAcgaatccatccatccaatgaagtttttctctctcttttttttgacattttatggTTTTGCGGAAAAAAAGAGGATAGGAGTGAAATGATAGACATAGCAGAGTAACAGATTTGtttcatttagcattttacGCACATGTTAAAGTCGCTGTTAGCTTATACACCTGATGGCCACACTTCAAGGCCTTGTTTTTTCAATGAGTAAACAGGAGCAGCAGATTGCAACCCCCTATATGGTGATAAGGCTTTACTCGATATAAACATGCACAGATCAGTGTTTATTTAGTAGTCGGTTCTGCTGTAACTGCAAACAGGAGACAAACATCTCCTTGAAATCACAGTGTTTAAACTAAGATGGAGAGATCTTGAAATGGGGGGCTGGGCCACTTGCTGTTCCCACATGTGAATAATCTCACCAGATAAACTCATAGGAGTGTATTACACAGTCAAGGGCGGcatgttgccacctcacagggTCCAGGGTCCGAGCGGGTTCCCTCGCTTTGCCTTGCGATGGACTGGAGTTCCGGCCACTGCCTACGGAGAACAAGAGCATCCACCGCGATCCTGATCAGGAAGTAATGAAGTCCAACTCATGTTCTGGATCTCTCTTTTAATGGACTACCAAAGAGCAAATGAATAGTGCATATGAAGGGGAAATTTTAAGAACATGCACGAGCGTAGAAAATAGAAtgagtgtgcaaaaaaaaaataaaataaaattaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09343 NKX2-3; homeobox protein Nkx-2.3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56451 lncRNA downstream 59623 16788519 ~ 16788729 (-) True G47735
TU56444 lncRNA downstream 80842 16765709 ~ 16767510 (-) True G47731
TU56286 lncRNA downstream 156753 16676050 ~ 16691599 (-) True G47599
TU56130 lncRNA downstream 402048 16444696 ~ 16446304 (-) False zdhhc16a
TU55985 lncRNA downstream 575821 16271270 ~ 16272531 (-) True G47359
TU56621 lncRNA upstream 155956 17008840 ~ 17009049 (-) True G47882
TU56682 lncRNA upstream 237498 17090382 ~ 17090583 (-) True G47940
XR_004577905.1 lncRNA upstream 264070 17116954 ~ 17129613 (-) True LOC117596916
XR_003404617.2 lncRNA upstream 518558 17371442 ~ 17419407 (-) True LOC113545496
TU56927 lncRNA upstream 647749 17500633 ~ 17503860 (-) True G48158
XM_026942495.2 mRNA downstream 5208 16841588 ~ 16843144 (-) True nkx3.3
XM_026944497.1 mRNA downstream 48720 16789679 ~ 16799632 (-) True pyroxd2
XM_026942127.2 mRNA downstream 62164 16767582 ~ 16786188 (-) True zgc:123010
XM_026932552.2 mRNA downstream 89066 16738724 ~ 16759286 (-) True loxl4
XM_026933052.2 mRNA downstream 123691 16702726 ~ 16724661 (-) False crtac1b
XM_034303171.1 mRNA upstream 22317 16875201 ~ 16892736 (-) False LOC113545189
XM_034303170.1 mRNA upstream 22317 16875201 ~ 16892736 (-) True LOC113545189
XM_034303172.1 mRNA upstream 22317 16875201 ~ 16892735 (-) False LOC113545189
XM_034303173.1 mRNA upstream 22317 16875201 ~ 16892735 (-) False LOC113545189
XM_026944401.2 mRNA upstream 22317 16875201 ~ 16892735 (-) False LOC113545189
TU55523 other downstream 1431869 15413941 ~ 15416483 (-) False c3h10orf53
TU55100 other downstream 2063618 14779865 ~ 14784734 (-) False sdhaf4
XR_004577668.1 other downstream 2656109 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 3817156 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 4114070 12734200 ~ 12734282 (-) True trnal-cag
XR_004577773.1 other upstream 126247 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other upstream 126247 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other upstream 126247 16979131 ~ 16982729 (-) False morn4
TU56907 other upstream 618303 17471187 ~ 17476061 (-) True cisd1
XR_004577786.1 other upstream 709448 17562332 ~ 17574422 (-) False LOC113538666

Expression Profile