RNA id: XM_034302933.1


Basic Information

Item Value
RNA id XM_034302933.1
length 3332
RNA type mRNA
GC content 0.47
exon number 9
gene id shld2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 9961960 ~ 9976416 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGTTCGGGTCGTCGTCCTCTTTGCCCACGGCCTCGCTGTAGCGCCGCAGCCGCATGAGAGACGCCGAGGCCGGCAGAGTGGCGTCGCCGAGTCCCGAGGCCAGAGCGCTGCCTCCCGCTCGGAGGACTATTCCCCTGCTATTCTTAAGAAGAAGTTGAAAGATGTGAAAGAACACTAGTATGGCAGATAAACTGAAGGTCCATGTGTTTTTGGGTGCACCCAATCCCCAATCACTGTCTGAGGAGGATAAAAGTTCCTTGGATAAAAGTTCCAATCAGTGGAGGACTTTAGAGTTTAGTTGGAATCAAGGAAGGCTAATGCCCAGGAAGGaagtgggtgagggccagatacATAGTCATGTTGCTGCAGAGGCCATTAGTAGCCGGAACACAACCACTGATCATGAGAAGCATGGTGTTTCAGGTTCTCATGAGGGTAACATGACAGTGTCTGAAGATGATATTACACCCTCGATTAGCCAGTCCTCTCTGGCCAAGCAAGCACTACCTGAAGAGGATGACATGAGTCCCGGACTGGTTACTGAGTATCTAGATAGCTGCTTCCCCTCCCCACAAGCAGACTCAAGATCTGACTCTGAGCCAAGTCCAGCCATGTCTGCAAAGACAGAATATCTAATCACCTGGACAAAGACACAAGGATTGCTCCTGAAACCTGGAGTTATTAGGGAGCAGGGCTCTGCCTCAGTCAGCACACTTGGATCTCCCCAAACACCACCAAAACAAACCCCTTCAGCCTCTTTGGACTCTCCAGAGCTCTACAGCCCAGAGGTCAGTCCAGGAGATAGAGGCCTGGGAGGAACGCTGCAAGGGTCAGTAGAACTTTATGAGAGTCTGAGCCAAAGGCTGCAGGAAGGAGGTGTGATTTTGTTGCGCACACCTGATGGCCTTCTGTGCTCTCAGGCCAGTGCATTGGAGCAGGAGGACTATGAATTCCATTTTGGCTCCCCGAACAAATCCGTAGAAGCCTCACCTACTCCCAGCACCTCAAAACGCGCTAAGCTCTCTTCAGCTACAGCTCGGAGGCAGCAGGGAACtggacaaaaaaacatcctccTACTTCATGGTCCAACCACACTGCTCTCCAGGTGCATCAGTCACGGAGTGAGTTACTCCATTTTGGTTGCTGTGGTGCACCCGTGCCACGTGAAGGAGATCAGCGTGAAGTCTGGAGCATCAACTGGATCCAGTGTTCCGCTGGCTACGGTGATTgtcactgaccaatcaggagtGGAGATGAAGGTGGTGCTGTGGAGGGCAGCAGCGTTCTGGGCGCTGACTGTCTATCCAGGAGACATATTGCTCATCACAGGTGTGACAGTGCATGTGGATAAATGGCGAGGAGAAACTGTACTACAGTCATCCTATATGAGTCAACTGCTGAACCTGGGCCAGGTCACTCAAGGCCATAACCCACAAGCTccacaaaatgtaaatattcacaCACTGAGAGCTCTGTGTACTCATCTACATGAGAAGCACCCTCTGCTGGTGTCCCTGCCTCCTCGCACCGCTCAGAACCTGCAGTCAATCCCCTTCGTCCACCTCGGGTCTCTACGACCTGACACTCTGGTTCATGCACTGCTAAGAGTCAAACACACCAAGATGATATCAGagTGGCGCAGTGAAGCCGAGGGTGTGTCCCGGACATGCAGTGTGCCCAAAGCTGTGTTAACCGTAGAACAGGGGGGCGACAGACAAGGAGCCGTTGTTCTATGGGGAACTGCTCTCACCTGGctacagcacatacacaccaacAAGGATGCAGTTTGGGAGTTCCGGCTGCTGCTGGTGAAACAGGATATGACTTCAGGCCTGCTAGAGCTTCACTCTACCCCATGGAGCTCATGCCAGCCTCTGCTCCCAAACAGCCCACGATACAAAGAGTTCTGCAGCACAGTCACTTCACACCGGGGCAGCAGCAGCTTTGAGATTgacctacacacactcctgtctcaGAAATACACAGGTGACGTAGAGCTAAGAGTTCACATTGTAGCATTCCAGTTCCACAGCACTCCTTCCCAGGATGCAGTGCTGCTCATAGATGGAGAGACGGCTCTGGAAAGGATCCTGGACATTGTGTCTGGTGACATCACATTCACTGGATGTGGCCTGTGCTGTGCTGAGCTAGACACAGACGAGAATGGCATCTACAGACCGTGCTATCCATGTCTGCCTCATACTGGAGTACGCCGTTATTACAGGCCTGTAGTTCTGACTGTGAGAGAGCGACAGAGTCAGGTCTGTGTGCATGTTCCACCTACACTTGTGCAGAAGATCCTGCTTAACACTGCACCAGACAAGCTAAACAAGACTGTAGCTCCTGTGTCAGAGGAGAGATTTGTTCAGATAGTGGCTAAGAGGATCCACTCCATCCTGTCCACTCCAAGGTCCATGTTTCATCTCACCATCCGCAGCCATTTTGACTGTGATGAAAACAGCATTCCTATCATACAGAATTTCTTgctattagattttatttcacaggaAGCATCAAGCAATGAACATGTGCCCTTATAATTATGACTTGCCTTATGtacaaaatgtttcttttccaaatcaGACCTGGAATAATTGTAATATGTAAAAGCAATATGGATATAAATTATTTCTGTGTCTATGTAAGTATAATTTGCAAAATGAAATTTTGTAAAAGCACTGATTTACATATTGacctgtatatattttacactcACCATTTAGTACATTGATGATTGATTTTAACCAATAAAATAGCTCTGCATTTGCACTGTTTTAAACAATTCTTAAAATCTCTCAAATACATGAGTGTCTATTAGTCATAATTAGAATTCCTGTTCGGAGTCCTTCATTTCTGGAATATTGTCCCTGGCAAAGAATTTCACATTACTGTGTCAGAAAGGTGCAGTCTTTCTTTGTTAGTACCTACACTTGGGAAGCATGTCAACACTGAATATTGTTAAAAAGAAGACAGAATTAGACTGTGATATCTGCATGTGGAGTGCATCAAAATATTGTAATGAGCTTTTAATCTACATTCTATTGTAAAATACATTCTACAAGTAGAAGATGGATAGTGTGGGAAACAGTATATAAGGTTTAAAACACTGgttaaaaaacacagtttttttcatgttataccacagcactgttgtattctcaaatctgatgggtcagaaggtgattgattttctataacagcagctctgacagtagtgctgccTGTAATTCACATTActggttaatattaatgtacttaTTGTAATACGTTACTCTTTCTATAACAACAAACcactcacagggacttgtatgacagacactctacataaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51681 lncRNA downstream 41761 9919975 ~ 9920200 (-) True G43728
TU51679 lncRNA downstream 45061 9916681 ~ 9916900 (-) True G43726
TU51678 lncRNA downstream 46159 9915191 ~ 9915802 (-) True G43725
TU51677 lncRNA downstream 46983 9914585 ~ 9914978 (-) True G43724
TU51676 lncRNA downstream 48252 9913340 ~ 9913709 (-) True G43723
TU51702 lncRNA upstream 23543 9999959 ~ 10008449 (-) False sncga
TU51701 lncRNA upstream 23568 9999984 ~ 10008561 (-) True sncga
TU51739 lncRNA upstream 40002 10016418 ~ 10017028 (-) True G43775
TU51710 lncRNA upstream 45151 10021567 ~ 10024042 (-) True G43752
TU51743 lncRNA upstream 49853 10026269 ~ 10026469 (-) True G43779
XM_026939846.2 mRNA downstream 2502 9944240 ~ 9959459 (-) False nfkb2
XM_026939857.2 mRNA downstream 6929 9944240 ~ 9955032 (-) True nfkb2
XM_026934239.2 mRNA downstream 59049 9897237 ~ 9902912 (-) True hnrnph3
XM_026942068.2 mRNA downstream 133708 9816288 ~ 9828253 (-) False tacr2
XM_026942060.2 mRNA downstream 133708 9816288 ~ 9828253 (-) True tacr2
XM_026933400.2 mRNA upstream 18205 9994621 ~ 9996645 (-) True zgc:193505
XM_026944892.2 mRNA upstream 23575 9999991 ~ 10008535 (-) False sncga
XM_034302697.1 mRNA upstream 59072 10035488 ~ 10072123 (-) True bmpr1aa
XM_034302698.1 mRNA upstream 59072 10035488 ~ 10060452 (-) False bmpr1aa
XM_034302190.1 mRNA upstream 99873 10076289 ~ 10128979 (-) False ldb3a
TU51003 other downstream 733077 9224881 ~ 9228884 (-) True sf3b5
TU50809 other downstream 1108167 8801243 ~ 8853794 (-) True G42967
TU50810 other downstream 1108167 8849109 ~ 8853794 (-) False G42967
XR_003403913.2 other downstream 1178163 8755869 ~ 8783798 (-) False zdhhc5a
trnae-cuc_7 other downstream 1491532 8470358 ~ 8470429 (-) True trnae-cuc_7
trnag-gcc_1 other upstream 1732198 11708614 ~ 11708684 (-) True trnag-gcc_1
TU53378 other upstream 2168479 12144895 ~ 12152506 (-) False tmem254
TU53492 other upstream 2548220 12524636 ~ 12534075 (-) False LOC113537616
TU53486 other upstream 2555027 12531443 ~ 12534075 (-) False LOC113537616
TU53537 other upstream 2655397 12631813 ~ 12633015 (-) False LOC113539135

Expression Profile