Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026933400.2 |
| length | 1199 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 3 |
| gene id | zgc:193505 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 9994621 ~ 9996645 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU51681 | lncRNA | downstream | 74421 | 9919975 ~ 9920200 (-) | True | G43728 |
| TU51679 | lncRNA | downstream | 77721 | 9916681 ~ 9916900 (-) | True | G43726 |
| TU51678 | lncRNA | downstream | 78819 | 9915191 ~ 9915802 (-) | True | G43725 |
| TU51677 | lncRNA | downstream | 79643 | 9914585 ~ 9914978 (-) | True | G43724 |
| TU51676 | lncRNA | downstream | 80912 | 9913340 ~ 9913709 (-) | True | G43723 |
| TU51702 | lncRNA | upstream | 3314 | 9999959 ~ 10008449 (-) | False | sncga |
| TU51701 | lncRNA | upstream | 3339 | 9999984 ~ 10008561 (-) | True | sncga |
| TU51739 | lncRNA | upstream | 19773 | 10016418 ~ 10017028 (-) | True | G43775 |
| TU51710 | lncRNA | upstream | 24922 | 10021567 ~ 10024042 (-) | True | G43752 |
| TU51743 | lncRNA | upstream | 29624 | 10026269 ~ 10026469 (-) | True | G43779 |
| XM_034302933.1 | mRNA | downstream | 18205 | 9961961 ~ 9976416 (-) | True | shld2 |
| XM_034302934.1 | mRNA | downstream | 18610 | 9961960 ~ 9976011 (-) | False | shld2 |
| XM_026933372.2 | mRNA | downstream | 18612 | 9961961 ~ 9976009 (-) | False | shld2 |
| XM_026939846.2 | mRNA | downstream | 35162 | 9944240 ~ 9959459 (-) | False | nfkb2 |
| XM_026939857.2 | mRNA | downstream | 39589 | 9944240 ~ 9955032 (-) | True | nfkb2 |
| XM_026944892.2 | mRNA | upstream | 3346 | 9999991 ~ 10008535 (-) | False | sncga |
| XM_034302697.1 | mRNA | upstream | 38843 | 10035488 ~ 10072123 (-) | True | bmpr1aa |
| XM_034302698.1 | mRNA | upstream | 38843 | 10035488 ~ 10060452 (-) | False | bmpr1aa |
| XM_034302190.1 | mRNA | upstream | 79644 | 10076289 ~ 10128979 (-) | False | ldb3a |
| XM_034302186.1 | mRNA | upstream | 79644 | 10076289 ~ 10123059 (-) | False | ldb3a |
| TU51003 | other | downstream | 765737 | 9224881 ~ 9228884 (-) | True | sf3b5 |
| TU50809 | other | downstream | 1140827 | 8801243 ~ 8853794 (-) | True | G42967 |
| TU50810 | other | downstream | 1140827 | 8849109 ~ 8853794 (-) | False | G42967 |
| XR_003403913.2 | other | downstream | 1210823 | 8755869 ~ 8783798 (-) | False | zdhhc5a |
| trnae-cuc_7 | other | downstream | 1524192 | 8470358 ~ 8470429 (-) | True | trnae-cuc_7 |
| trnag-gcc_1 | other | upstream | 1711969 | 11708614 ~ 11708684 (-) | True | trnag-gcc_1 |
| TU53378 | other | upstream | 2148250 | 12144895 ~ 12152506 (-) | False | tmem254 |
| TU53492 | other | upstream | 2527991 | 12524636 ~ 12534075 (-) | False | LOC113537616 |
| TU53486 | other | upstream | 2534798 | 12531443 ~ 12534075 (-) | False | LOC113537616 |
| TU53537 | other | upstream | 2635168 | 12631813 ~ 12633015 (-) | False | LOC113539135 |
