RNA id: XM_026933437.2


Basic Information

Item Value
RNA id XM_026933437.2
length 1895
RNA type mRNA
GC content 0.52
exon number 8
gene id vegfc
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3193301 ~ 3253363 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCCGTGCAGTGCATCAGTCGCGGGAAAGAAGGAGGGAAGAGCAGAAGgggaaaagagggagagaaagacagacgaGCAGCAGGCGCGGAACAGGGAGAGGACACCGTGGAAAAggacacaaattaaaaaataaataaataaataaaaaacagcccGGCGCGTTAAACGTGATGCCATGCGGCCATTGAGACTCGGGGACGGAGCTTCGTCATAAAGCCGAGCGCGCGAGGAGAAACCGGGCAACACTGCTGGTGCAAAGGGACATTTTacgcatcatcatcatcatcatcatcatccccatcatcatcatcatcatcatcagaagcAGCTGCAACATCATCACCAAAATATGTCCTCAAGGTCTGTGTGAAAAGAAATATTCGGATTACTTTCATGCACTTCTCTGAACGCTGAACTACTGATCATCCAagaaaccagagagagagagagagagagagagagagagagacggacaggAGCTTCAGATCAGATCGGATCGGATCAGATCGGATATTTTGGGGGAGATTTACCTCTTTAAGATGCACTTTCTTGGAATATCAGTGTGGTTTGCATTTTCGGCGCTGCTCTACGCGAACCTCGCTTTCCAATCAAGCCACGAGTACTATGATTATGAGCAGGAGGAAGGAGATGATGGCATGgagccGTCAGAGCCGGATCTGGAGGAACAGTTGCGTTCTGCGGGCAGTGTGGATGAGCTGATGAGGCTACTCTACCCCAGTTACTGGAACATGTTAAAGTGCCACTCGAAACGCGCCATCAATCCTCGCTCCTCTCACAGAGACCCAGACACGCGCTCAGAGGAGCTCTCCTTCGCCGCCGCCTACTTCAACCTCGATATATTTAAAAGTATTGAGGCGGAATGGAGAAAGACCCTGTGCATGCCACGCGAGGTGTGTTTAGATGTGGGGAAAGAGTTTGGGGCGGCGACAAACACCTTCTTTAAACCCCCGTGCGTGTCTGTCTACAGATGTGGAGGCTGCTGCAACAGCGAGGAGCTCCAGTGCATGAACATCAGCACCTCCTTCATCAGCAAAACGCTATTTGAGATCACAGTCCCTGTGAAGCAGCCGCCCAAGCCAGTCACCATCAGCTTCGCCAATCACACCTCATGCAGCTGTTTGTCCAAGCTGGATGTGTACAGACAGAAACATTCCATCATCCGGCGAGCGCTGCCAGAATGTCATGTGGCGAATAAAACATGCCCGAAGAACCAGAGCTGGAGCAATGGCTTATGCAGATGTGTGTCTCTGCATCACACTTTTCCCCAGCAGCACTCGGacCCTTTCGAGCAGGATTTCTGTGGCCCCAACAAAGAGCTGGACGAGGAGACGTGTCGATGTGTGTGTCGAAAGGACCTGAGGACGGCAGGCTGCGGGCCGAAACGTCACCTGGACAAGAACacgtgtcagtgtgtgtgtaaaactcaGCCGAGGTCCTGCGGCCCTCATCACACCTTCAACAAGGACACGTGCCAGTGCAGCTGCAACAAAGTGTGTCCCAGCACACACCCACTCAACCGCACCAAGTGTGCGTGCGAGTGTAACGAGTCTCACAACAAGTGCTTCCTCAGGGGGAGGAGGTTCCAGCCGGCCACGTGCAGCTGCTACAGGCTGCCGTGTCCTGGGGACCCGAGGAAGCGAGAATGCGAGGAGGGATTTTACTTCAGCGAGGAAGTGTGTCACTGCATCCCCAATTACTGGAGGAGACTGGATTAGCCGATGCAAAGCTAGCAGCTAACGGAGCTAAAAGAAGCGCAGAGATGCTAACATAAGCAGCCTTCCTGGTGTCTGCTGCTAATCGGACTCCCTTTCGCTAGCATGGACTAGCAAATCAGCAAATGGGGActcgctaaaaaaaaaaaaaaaaaaaga

Function

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0048845 venous blood vessel morphogenesis biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0001938 positive regulation of endothelial cell proliferation biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0016020 membrane cellular_component
GO:0005172 vascular endothelial growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K05449 VEGFC_D; vascular endothelial growth factor C/D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46198 lncRNA upstream 762214 2427812 ~ 2431087 (+) True G38962
TU46183 lncRNA upstream 766701 2411201 ~ 2426600 (+) True G38948
TU46126 lncRNA upstream 880850 2311651 ~ 2312451 (+) True G38895
TU46052 lncRNA upstream 1027816 2165170 ~ 2165485 (+) True G38826
TU46035 lncRNA upstream 1066634 2124070 ~ 2126667 (+) True G38812
XR_004577844.1 lncRNA downstream 147432 3400795 ~ 3403106 (+) True LOC117596855
XR_004577906.1 lncRNA downstream 261738 3515101 ~ 3525121 (+) True LOC117596918
TU47566 lncRNA downstream 261738 3515101 ~ 3525093 (+) False LOC117596918
TU47719 lncRNA downstream 429980 3683343 ~ 3685205 (+) True G40287
TU47821 lncRNA downstream 611333 3864696 ~ 3865000 (+) True G40374
XM_034302871.1 mRNA upstream 993766 2193949 ~ 2199535 (+) True LOC113541301
XM_034302870.1 mRNA upstream 1008653 2174587 ~ 2184648 (+) True LOC113544637
XM_034302865.1 mRNA upstream 1029609 2151929 ~ 2163692 (+) True dctd
XM_034302864.1 mRNA upstream 1029609 2152579 ~ 2163692 (+) False dctd
XM_034302867.1 mRNA upstream 1074534 2109068 ~ 2118767 (+) True tmem134
XM_026941131.2 mRNA downstream 43170 3296533 ~ 3306323 (+) True LOC113543098
XM_034303035.1 mRNA downstream 54471 3307834 ~ 3325642 (+) False asb5b
XM_026941145.2 mRNA downstream 54472 3307835 ~ 3325585 (+) True asb5b
XM_026941154.2 mRNA downstream 54531 3307894 ~ 3325585 (+) False asb5b
XM_026941179.2 mRNA downstream 54754 3308117 ~ 3325585 (+) False asb5b
XR_004577910.1 other upstream 1027517 2165623 ~ 2165784 (+) True LOC113546173
TU45993 other upstream 1101995 2085465 ~ 2091306 (+) False stox2a
TU45995 other upstream 1102080 2085465 ~ 2091221 (+) False stox2a
TU45994 other upstream 1102460 2085465 ~ 2090841 (+) False stox2a
TU45964 other upstream 1196049 1983657 ~ 1997252 (+) False cdk2ap2
TU47789 other downstream 578586 3831949 ~ 3834611 (+) False LOC113545357
XR_003404319.2 other downstream 2010219 5263582 ~ 5356697 (+) False znf827
TU48562 other downstream 2065171 5318534 ~ 5341750 (+) True G41047
TU49753 other downstream 3950587 7203950 ~ 7221023 (+) True G42075
XR_003404394.2 other downstream 4395835 7649198 ~ 7666033 (+) False naa15b

Expression Profile