RNA id: XM_026933461.2


Basic Information

Item Value
RNA id XM_026933461.2
length 1567
RNA type mRNA
GC content 0.36
exon number 5
gene id npm3
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20407934 ~ 20413712 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCTTGCGACGGGAGTAGTGTAGTCGTCATATGTTTTGAAGCTAGCTTGAAAATTTGAAGATTTGCATTATTAACGCTCAGTTCACTTGAATTGTCTTGTATATTAAAAATCATGTCGTTTTTAGAGGACGAGAGCTCGAGCAGCCTAAGCGGTGCACATTCACGACTGGAAAGCTATGTTTTTAGCTGTGAATTATCCTCTGAAGTACCCTTCTACACCTTTCAAGGCGATGAGGAAGAGGATTTAGAGCATTTTTTAGAACTCCGTACGATCTGCCTTGGCGAGGGGGCTAAAGAGGAGAACAATGTGGTGGAGGTGACTGCCATGAATCACAAAGGGAAGAAGATTTCAGTGCCAGTAGCAAATCTCCACATATCTTGTCTTCCCATGGTAAGCCTGGGAGAATTTGAATTGATGGCACCCGTAACACTACGCCTGAAATCAGGAAGTGGGCCAGTGACGGTTAGTGGATTACACCTAGTTGCTTCAGAGAATGAAGAGTCAGAAGTatctgatgaagatgatgagtcTGAGGAGGAAATGCCCCCCATTAAGCCAGCCAAAAAGAAGCAGAAACTGTAGAATCAACAGTTGATGAAAATTTCAATAAGTTTTATACAAGATAATGTTCCATAAATTGTTTTCGATACAGTTACAATGGActgcagagcaaaaaaaaaaatgtgaagcttgaatatttttttaaaagaattgtGTGGACCAGCTCCATATACATTTTGTGATTCTTCATATGAAAAGTGTTTTAACAGTTAACCTGATAAGTTCCAAAATGCTGTAAGTGTTTGTGTAATGCAAGCAGTTTTTGCTTGTCTTTGTAATGCTTATGATGCATGGCATTTTGGAACAAAACTGTATTTCATTGTGTGGTTaaaatgtttactgtttttcatttgttgaGGGACAGTTAACGGTCACTAAGAAATATGTGTTCATGTTGTTGGATTACTATTAATTACCCTTAAGGAAGTTCACCAGCACTGTTTCCTGCAGCTGTGCAAGTATGATTTtaatctgtctttcttttttttttgatggcaCATTTTATTGATAAGTGCTGAAACACAAAGGACTGCCATGGTTgacttttttgtacatttataggTTTTCTGAATTAAAATAGTTCCATCTGTAGCAACGTTTACcacatttctgttcttttacagtattacatttctcttttcttagGATGAAGCAGACAAATTATGGATACAGTCAATTttgattctaaaaaaaaaaaagtaagcaaataaaatcgtccagttttgttttaaatagaaCTTATAACCATTAGCTACATGTTGCAAGAGAGAGCTGAGGACTTAGAGAGATCTTAGTCCAAGATTGCTCGCTCTGTATTGTCCAAATATATGAAACTTTACAGGAGACTCAGAGCTGTTATTGTTGGCAAAGGGAGATTGTGCAAAGACCAATGTGCAGAGGTTCTTATTACGATATGTGTTTTTGCTAGAACAATGATATTATAAAATTttagtttctgtttattttctaaatttactttaattaaaggttcaatttgtcatgtt

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K11278 NPM3; nucleophosmin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58889 lncRNA upstream 15347 20392367 ~ 20392587 (+) False pprc1
TU58738 lncRNA upstream 216790 20155901 ~ 20191144 (+) True G49643
TU58721 lncRNA upstream 224741 20121048 ~ 20183193 (+) True G49630
TU58541 lncRNA upstream 408248 19972587 ~ 19999686 (+) True G49518
TU58539 lncRNA upstream 464859 19933042 ~ 19943075 (+) True G49517
TU59001 lncRNA downstream 110104 20523816 ~ 20524049 (+) True G49853
TU59014 lncRNA downstream 167089 20580801 ~ 20585500 (+) True G49863
TU59015 lncRNA downstream 171892 20585604 ~ 20589230 (+) True G49864
TU59007 lncRNA downstream 206226 20619938 ~ 20716297 (+) True G49857
TU59323 lncRNA downstream 536858 20950570 ~ 20950991 (+) True G50140
XM_026932427.2 mRNA upstream 864 20395757 ~ 20407070 (+) True oga
XM_026932438.2 mRNA upstream 864 20395758 ~ 20407070 (+) False oga
XM_026945692.2 mRNA upstream 15333 20382346 ~ 20392601 (+) True pprc1
XM_026936694.2 mRNA upstream 146148 20258736 ~ 20261786 (+) True commd8
XM_026933582.2 mRNA upstream 193255 20212460 ~ 20214679 (+) True lamtor3
XM_026932302.2 mRNA downstream 1609 20415321 ~ 20421371 (+) True arl3a
XM_026942449.2 mRNA downstream 54911 20468623 ~ 20478746 (+) True zmp:0000000662
XM_026939417.2 mRNA downstream 72208 20485920 ~ 20496715 (+) True ube2d3
XM_026939407.2 mRNA downstream 72210 20485922 ~ 20496715 (+) False ube2d3
XM_026939425.2 mRNA downstream 72214 20485926 ~ 20496715 (+) False ube2d3
XR_003403773.2 other upstream 1051836 19341350 ~ 19356098 (+) True sfxn5a
TU59013 other downstream 161261 20574973 ~ 20575479 (+) True G49862
trnae-cuc_10 other downstream 591738 21005450 ~ 21005519 (+) True trnae-cuc_10
TU60121 other downstream 1607695 22021407 ~ 22023811 (+) True wu:fj16a03
TU60615 other downstream 2370616 22784328 ~ 22786505 (+) True G51271
XR_003404579.1 other downstream 2700473 23114185 ~ 23115039 (+) True LOC113545030

Expression Profile