RNA id: XM_034302747.1


Basic Information

Item Value
RNA id XM_034302747.1
length 5113
RNA type mRNA
GC content 0.46
exon number 37
gene id cfap43
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 12957156 ~ 12981378 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaccagCAGCCAATGGGAAACGAACAATGGTACCACGTGATTCCGCTGTGTTTCGCTTATGGTTGCCATGGGAAAGAAAACACGTAGCCAGTAGTAACGCACTAATCACGAGCCGGCCATTTCATTCTGCAATGGATGTTTCAGGGAGTTTGGAAGTGAGGTGGGTGCAGGGGTTCACCAGCAGCAAAGTTGcatttttggacaaaaaaacaGCCTGTTACCCCTGTGGAAATTACATCACCTTCCTCAATGTGgagacaaaaacaagaaaagtgcTTCAGAGCCCTGGTCATGGCATCGGGGTCTTCACAGCAAATGGACTTTGTAAAACTCTCGCTTTTTCTGAGCAGAAACGTCTTCCATCCATTTTTGTGTATGGATACCCTGAGCTTAGCCTGAGATGTGAGCTTAAAGGCACAGCTAAACTGGCCTACACAGCCCTCGCACTGAGTGATACTGCTCCGTATTTAGCCAGCTGTTCATCTTTACCTGATTACACCATCACAGTGTGGAACTTGGAAAGGGGGATTTCAATTTGTAACAGTCGAATGGAGGAAGAGGATGCCATAACCCTACTTTTCAATCCAATGAGCTGGCAGCAAATTTGTGCTGTGAATCCAAAATGTCTAACAGTGTGGAATATTGAGAGAAGTAACGACTTCCATATTATGAAGCCCAGtgttattgATCTCCCTGCCATTGACGGCTCTGTAGTTGAGCAGGAGGTCGACACTTCTTATGTCCCCACTGGGAAGCTGACATACTCTGGCCCTCAGATGCCCACTTCAGCTATTGCAGGGCTGATCGGTGACAGAGCAGATAAAATTTCGGCACTGAATTCACTTCGAGTGAAACCTCGACTCTGCCCAAGTGCCATCTGCTGGTCAGTGTCCTCAGATCTATATGTTGGGACTAAAGAAGGTTTCCTGCTGCTAGTAAACACTGAAAGTCTCCTTGTATCTATTCTGCACAACCCTCATATTAAGCAAAGCCCCTCAGATCCCGATGCGAGCCAGGTGATTCAGGAAGGCAGTTTTCAGAGCTTGGCACTACACAGTAAAGGAGTGTTTGCTACAGGACCTGATGGTGTTTTGCAAACCCTCCAGATTAAAGGGAACCAAGTGAAAGTGGTGGAAACTTTAGCTTTAGTGGAACCAGTCTCAAGTTTGTGCTTTTCACCTGACTATGAAGCATTGCTGCTGTCCTCAACCACTGGACGCATTTACAAGTACAATCCGGGGCTTAAAAATGAAGTCGTCAAAGTTCTGGATGTATTGTGTGGAGACTTTATCGCTGCTGCTCCAATATACACTGAAAAGAACCTCTGTGTGTCAGTCAGAGAGTCTGGGGAGCTGCAGCTGTGGTCACTGGAGGATGGAGATTGCATTGCATCCATCTCTCTAAAGACAAAAGTGACCTGCTTGGCATGTTGCCCAATAGCACAGTACGTAGCTGTGGGAGCCGTAACAGGCCATGTCCTGTTTGTGGATCTGACCAGAGCACAAAAACCTCGACTGGTTCACACTGTCCATCTGTACCATGTGCCTGTAGAGCATTTAGTTTTCGACCAAGGGGCAAATTTCTTGATTACAGGAGCATTCCATTCACACATATTTTTGCTGGATGCAAGACCATCTAAAGCATTTGAGATTATTGGATACACTGACTCTATGGGTGCCACCGTGAGTCTGTCAACCCAGTACCAGAAGGAGAGCAAGAAGGTGGATGTGCTGGTGCTCTGTAATAGTGGGAAGAGGAAGAGCAGGAAGGCTAAGGAACATAATGAAGGGAATCTGTTCATGTTGCTGTCAGTGTCTACACAGCAGATCTCAGATACAGCAAATTGTGTGGACCCCCATGGCCGCCTGCGAGAACAAGTTATTCAAACCTGTGTATATGAGATCCCACACTCTCTTTCCTCATGTGTTCTGGGTACCAAAAACATCTTTGGTTATTGTCACCAGAAGAAAGTTCTGCAGAGATTCCAGCTACCACAGAATGTGGATAAATTGTCcagcaaacagaaaataattagATTGAGGCCAGAGAAGGAGGTAGAGGGTCATCCTCTCGGCCCTGCATTACTACGTCTCTCACCTCATCAGAGCTGGCTGGCGTCTGTCGGCAGAGACGGGCTGCTTTGCATCCATGACATCACCACTCTGGAGAAGTGTGTGCAAAAGCAGTGCCACTCTTGGTGGTTGGGAGGAATTCGCTCTGTGTCTTTCACCCCTGACAGTCAGACTCTTATCACTACCGGTTTCCGAGATGGCTCACTGGTCTGCAGCAGGCTCAGtttaaagaTGGCTGCAGCTACCCAGCATGACCTGTCTATGGTGGCCTCCTTTGAAGATAAAATTTCCCAAGAGAACCCCATCCTCAGTGACATGGCTGACTGGGAACCGCCATCACAGGCACCAGTAGAGGTACTCGAAGAGGAGAGCCAGCAGTTTTCAGAGACCAAGAGGAGTCTTAAGAAGAGTGTAGAGGAACTTCGGGACACAATCCAGGCTATGATGCAGGAGAATGAGAAGCTGCCAGACATGGAGAAGCTGGAGCAGCTGGAATTTAACCTGGACATGGAGGAGCAGCAGAGACTACAAGCTGAGGGAAAGCAGGAAGTCACCAAGGTGAGAAAGGAGATTGAGCATGAGAACCTGGCAAAATGTTATCTGCACGATATTCTCAAGAAAAAGTACTGGGACTCCATGAACGTGAAAGGAAAGGCCATTAAgGCCTTCCACTCAGGGTATGAAGTGGATAACTTTCCCATGAAGGAACGCACAGCAAAGGAACTAGAAGAGCTTTACAGGGTAGAAGCCATCCGAAAGATCGAACAGGCTGACACTAGTTTGCAGCAGGACATTTTGGAGAACAACAAGGCACCATTagagagagatgaagatgaggaggatAAAGGGCATGAGGTGGAGAGCTCAGCTTTAACAGGTAGTCTGAGTGCTCAGTATGGAGGTTCCAACCCTCACTTATACAGCCAGTTCAGTCTGCGTACAAGAGACCAAAAGATCAACCAGATCACCCTGATACAGGACGTTATTTACAAAGTGAAAACAGCTTTTAACACAGCGTTTGAGGCTGTGTACAAGCAGAAGGAGCAAGAGATCAACCGCATAAGAGAGAAGAACAAGCGCATTACAGAGATTATGAGTAAGTTGGAGCTGCAGGAGACCCTGTGGGAGCCCACTCTGACCAACAACGAGAGACCAGAGAGAGCTCTCACTGTCAGTGACTCTGAGATCAAGGTTGAGATATACCTGACAcctgagcagagacagagagaggaggagcagAGAAAGGAAGAGGAGCAGAGGAGGCTTGCAGCAAAGGTGGACAATATCAGAGAGCGAGCTTTGGATGATATGATGGGTGGAGTTCTTGAGGTCAAAAAAGAGGACATCCTGAGTATGGAAGTACCACCACCAGAGTTTATTGATAAGCCTGAGCTCCAGTGGACAGAGGACGAAAGAAGAAGCTACAAAGAGtatgagagaaaaataaaggagCTCAGTGAAGAACAGGAGAAATATAGAAAGACCTTGGAGGCAGAGATGAAGAAACTGCAGGCATCCCTTAAAGATGCCACCCAGGCTTTTGATGAAACACTGAGCAAGCTGTTTGAAAGGAAAGTGAAATTAGAAATGATTGTATACCAGGAAGAGCTAAAGATCACCAATCTGTTCCATTCCTTACTAATTGAGGAAGAGATGCTGAACAGAGAGGAACAGCTGATCTACAGACTGGAGAAGGCACAAACTGTTAAGAATCAAATTGGGAAAACTTTGAATAATCACAGAGAGGATGTAGAGGCCTTTCGGGAGATATACGATAATACAGTAGCAGAAGATAAACTTCTTGAAAGTGGATTTCGCAAAGAGTTTTTTGATGTCCCTGGACACATTGTTGACCAGCTGTACAAGCTCTACAAGCGCAGACCCAGGATCCAGATTATgaggacacagacagacaagatAGGCTCGTTTAAGGAATCTCCTATGCTGAGTCGAGCAGCAGCAGAAGGACTCTCACAGATGATGAAGGCTATGGAGGAGTTAGATGCAACACAGAACATGCCAGAGGGTCTGGACCCAGCCGTGTGGGAGAGATTCTGTCTGGCCAGGAGGACCAAAGTAGAGAGTGAGCAGAAGGTAAAAATGAAGGCACTGACTTTAGCGGAGATGCAGACTTTTCTGCAGAAGAGAACAGCAGAGGAGGAGAACGCACAAATGGAAATCAAGAACCTTGTCGATAATCTTAATTGCCTGCGTGAAGAGAGGTCGAGGTTCTGCCTCAACGTTATGGTGCAGATTCTGGTAAAACAGGGCCAGGTTGAGGTGGAGGCTGGAGACTTTACTGCAGACTACTCAGACGCTTTGTTGCTCCACCGCAGTGTTGTGGAGGACCTGAACAACACCATCAGGGCTTTAGGAGAGCAGAAGATCACCAGCATGGTGGAGTGCAAAGATTTTCATAAAGGAATAATTCAGCAGGAATGGGAACATAAGAGGATGAGTAGGCAGATAGAAGATCTCAAAAACAAAGCCAGAGACATTCAGATGCTGCATGTGTCTCAGGAACTCCAAGAGTACCTGACAGAGACAGACCATGACAACAGAATGTCCAAGAAGGTATCTACTCTGGAGAAGACAATAATGTTACAAGAGAAGACTTATATGAAGAATGTAGAGAGCTGTAAGAAGCTGATAAAGGAGCTGAACAGACAAGCTgaggtgaaaaaagaaaataatgcagCTTTAGATCTGCAGCTGACCAACATGCAAGTGACTGttgcagaaagaagaaacatCTATGAAACCACAGCAATGGAGGAGAATCAAGAGCATGAAGTTAAGCAACGCTATCAAAACATCCTGCAGAGGAAGAACCTTGTGGACTTGGCCAAAGCACAGGATATGGACATAGCCATTCTGAGCGCTGAGTTGGAATGCATGCGGATGAAAACATTTCCTGCTCTTTCTCAATAGAAACATATCCGATATAGAACTTTGAATACAAAATCCTGTTAGACACTATTCACAATCATatttaaatgagcaaaatatgtaacaaagtgcaaaaatgtGGAATAAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53620 lncRNA upstream 86934 12870003 ~ 12870223 (+) True G45376
TU53604 lncRNA upstream 135768 12820856 ~ 12821389 (+) True G45360
TU53595 lncRNA upstream 145907 12810919 ~ 12811250 (+) True G45351
XR_004577841.1 lncRNA upstream 217931 12733432 ~ 12739226 (+) True LOC117596851
TU53325 lncRNA upstream 282534 12674408 ~ 12674623 (+) True G45170
TU53729 lncRNA downstream 35198 13011946 ~ 13017600 (+) True G45459
TU53744 lncRNA downstream 75492 13052240 ~ 13052529 (+) True G45473
TU53786 lncRNA downstream 118923 13095671 ~ 13095881 (+) True G45508
TU53888 lncRNA downstream 334929 13311677 ~ 13312080 (+) True G45592
TU53890 lncRNA downstream 336246 13312994 ~ 13313221 (+) True G45594
XM_034302606.1 mRNA upstream 19855 12929559 ~ 12937302 (+) True spef1
XM_026941541.2 mRNA upstream 28103 12920496 ~ 12929054 (+) True adam8a
XM_026941547.2 mRNA upstream 28103 12920496 ~ 12929054 (+) False adam8a
XM_026941862.2 mRNA upstream 45543 12909723 ~ 12911614 (+) True msx3
XM_026944749.2 mRNA upstream 82172 12871306 ~ 12874985 (+) True fuom
XM_026937794.2 mRNA downstream 5673 12982421 ~ 13005323 (+) True col17a1b
XM_026937865.2 mRNA downstream 55302 13032050 ~ 13034350 (+) False si:ch211-223p8.8
XM_034303041.1 mRNA downstream 55302 13032050 ~ 13033588 (+) True si:ch211-223p8.8
XM_026941889.2 mRNA downstream 57912 13034660 ~ 13039337 (+) True zgc:153981
XM_026943937.2 mRNA downstream 63459 13040207 ~ 13055375 (+) True dusp13a
XR_004577802.1 other upstream 20355 12929559 ~ 12936802 (+) False spef1
XR_004577803.1 other upstream 20355 12929559 ~ 12936802 (+) False spef1
trnat-ugu other upstream 289271 12667814 ~ 12667886 (+) True trnat-ugu
TU53286 other upstream 313962 12639836 ~ 12643195 (+) False LOC117596823
trnay-gua other upstream 320751 12636320 ~ 12636406 (+) True trnay-gua
XR_003404144.2 other downstream 5658 12982406 ~ 12999962 (+) False col17a1b
TU53738 other downstream 55531 13032279 ~ 13033248 (+) False si:ch211-223p8.8
TU54033 other downstream 521344 13498092 ~ 13501046 (+) False pcbd1
XR_003404567.2 other downstream 1236654 14213402 ~ 14283168 (+) False slc24a3
XR_004577898.1 other downstream 1384619 14361367 ~ 14367446 (+) False cgas

Expression Profile