RNA id: XM_026933521.2


Basic Information

Item Value
RNA id XM_026933521.2
length 3975
RNA type mRNA
GC content 0.41
exon number 7
gene id march8
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18716883 ~ 18786463 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATGCGCAGTTGCATGCATTTTTTATATCGTTTTCCTATTAACGCGGAAGTCTGAATGACGCACTCAGTCAGATGGAGACcgtgaaataaacaaaacatcgCGTTTTCCTGAGGTCagacagaaagcgagagagagGTCGTGATTAATGGTTCTCTCCAtcatgctgctggtggtgggctggtttctgtgtttgtgagagCTACACTGGCCTGCTGGGATGAACATGCCACTGCATCAGATCTCTGTCATCCCCCGGGATGTCACTTCCTCCAGGGGGTCTGGCAGCAGCGGAAAGGCCAAGGACAAGGATCGGGACAAACAGAATGAGAAACCACTGGGTCATTCTGCAAGCAGGTCCAGCAACATTTCAAAGGCAGGGAGCCCGACTTCTGTGAACGCCCCCTGCAGCTTCTCTCGAACTTCAGTCACGCCTTCAAACCAGGACATCTGCAGGATCTGTCACTGCGAGGGTGATGAGGACAGTCCACTGATCACGCCATGCCACTGCACAGGCAGCCTGCGCTTCGTGCACCAGGCCTGTCTGCAGCAGTGGATTAAGAGCTCAGACACACGTTGCTGTGAGCTTTGCAAGTTCGAATTCATCATGGAGACCAAACTAAAGCCATTGCGCAAGtGGGAGAAGCTGCAGATGACAGCCAGCGAGAGGAGGAAGATCATGtgctctgtctctttccatGTCATTGCCATTACGTGTGTGGTCTGGTCACTGTACGTCCTGATCGACCGCACTGCAGAGGAGATCAAACAAGGGATTCTGGAGTGGCCTTTCTGGACCAAGCTTGTAGTGGTGGCCATTGGCTTCACCGGTGGACTGGTTTTCATGTACGTGCAGTGCAAAGTCTATATCCAGCTGTGGAGGAGACTTAAGGCCTACAACAGAGTGATATATGTGCAAAACCGGCCAGAGACCTATAAAAAGATTGTTTTCGATAAACCTCTACTTATGGAACCAAACTTGGATAATAAGGAGGGTTTTGGGCCAGCGCAGTCGGACACAAACTCTTCGCAGTATACAGAGACTGAGGACTACAGCATGGAGATACTGCACGTGTGAGCAGCGCATCCACAGCCCAATTCCACTGGACCAGATGATGCTTTGCCTCCTGCCAGGGTACAGGAGGCACCACACAGCACTGGGCAGAGTAACTGAGACAGAACTCCTTCTGTTTTTtaggtgttttctttgttttgtctgttCTGTTCCTGTAAGTTGTTGGCTAGCCATTATGAGTCGGTGTGCACCAGGTCCAACTACTGCCATTGTACTGCTCTTGTACGAGATATGTGAAGCACCACTCGAGCTGTGTGCATCTGTGCTCACcctgtgtgtgagtatgtgtctCTGCGCTGGTTCTAATGGAGTCCTTAACAATGCATTTAAGCACTTTTTAGTTCCCTCTTTTAAGGCTCTCCTGTTTTAATAcccatacatttatatatacatgagaaaaaaaacaagcttgaAGTTCTGAGAGTTTTTCTCGCATTTtatatgacattttttattCCCACACAAACGTTGGATGTAAAAACTGGAAATTTGAGGAGAAATAAGGGAAAATGGACATGTTTTTAGAGTAATCATGCCATctttcataaaaaaagaaaatattttctgagTTGATCAGTCTTTTTCGTTTGTTTTATCTGATATTTAACTTATTCTAATGGTGATACTtattcaaaattaaattaacgATTATCTACCAAGGGCTAGAGCCACTAAAGCCACTTGCACAGTTTTAGCATGTTAATGTACTTGGTAGTGCCGGAACTCGTCATAGGCCCATCAAGAATACGTTGACCACTAGCTATGCTATGGTTTCTGTCTAGGCTGTCAGCCCTTAAGTGTTCCTTCTGAGGGCTCTAAAATGTAGATCTCATCCATTACCAGTTAGAGGACATTTTCCTGCAGAGATTAAGTTACCTGTAGCATCACAACACCTTTCTAGATGATTTGTGTTTTCTATACTTGAGTGAATCTTTATACTGAGTCTTTGTTTTGACCACTTTCCTTAAGAATTACTTTGGTCTTAGTTAAAGAGTACTTTATTTTTCTAACCCAGCAGGACAGTTTTTTATTCATGGTTTCACAGAGTTTCAGTTTGTTCCTACAACCATACACACTTTTGCATGTGACATGACATAATTAGCGTGGCTTGACAAACTTAACTGTAGCCTTTCAACACTTTGCTTTATTCTTTTTGTCATTATAGTTCatcatacatatttaaaatattatttcagcaTGAATGACCTTAAcatatgacattttaaaaacaacagtaaaTTGGTCAGTCTAGGACAAATCTACATATTCTGTAGAATTTGTTGCATGGTGTCCCTAAAATCGATTCGTTCACTCCTTCTCTTAAAGCGTACAGAATGGTGCAAGGTTGTTACGGTTATAAACGTTGAGAAATTTCCATGTTAACTGTGACTTTCACCATTTCCTCATGCAGTAAGTGTTTTTGATATAACATCACATTTATCTCCCTCATCATATAAGAATGTCAGGGCGAACCTGAAATCAGAGCATACTTCTGCCATCTAGTGGCAAAggtcacattttacattttgttatacAGATTTTAATGTAACCGTGAATGATTGGTGCAATTTGAGCAAAATGAAAAGTGCAATTACAGTTTGTTGATGGGATCATTCTTGCAGTCCTTTTCCAGTTTTCACATAGGGGTTTTAGTTCCACAGTTTATGCAAATAACACTACAGGTTTGATGTTGCACAGCTAATATAATATTGTACTTAGATCCTTGTACTCTTCTTGTGTGGGACAGAGGGGATCTCAACTATCTACTGCTTTGCTACATGATTACTGCGGGAATGCCCTTTACCAGCTTGTAAATCCTAACAAGCGCAGTTTCACACAACTGCAGCCTGGCGTCCTTTACGGTTTGATCCATTTTTCTTTGTGGTTTAGAAATCAGTGTACAGATGGATTTTGTTAGATAAATAGGAGCTGGCTCCTTTAAGTCTCTGGCAGTGTGGGACCACTGACAATTTATGGAATCACGTTcaaactgtaatatttttggACAAGGTATGATTTGGAGAATTTCTGGATTGTAATTCTGCATATGCCTTGTCAGGTGTCAGCTTTGAATTGCTGCACTCCGTCTGCTTTGTTTAGCGTTGATTTGTTGCAGTAATTGTATTGTTTGTCTCTTGACTCTTCATTGCTACAGGCTGCTAGTGGTTGAGCTCTGATGATCATGTGATCGATCACgcttactaacacacacagatgacacGTGCTTAGACATTGTTTCTTGCAAACTGCAATTTATTACTACTGAATCAACTTGAATGTGGTCAACATGACTGTTTCCTAGCCCTCTCTTATTCCATTCTTCTCTCTGTGACTTTTCTTTGAATAGTAAAAGTAATTtttcataatgtttttattgaaaTCTTGatgtgctttgttttgtttgatttccCATATTTGAGTATATAGACTGTAAAACAACcaaataaaatgaagtaaacCTATACATTGTTGCAAAtgagacattttgtttttgccaCACTCTGTACTGCTGTTATAAAGCAGTGGTTGCTTTGACACAACACTGCCTAAAGAATTGAAACCATCACATGTTCCTTGGAATACCCATTTCCTCGGTTTCCATACGGCTACTAAATGTCATCAAGGCCTTTCACAAGCACTGTGTCAAAATAGAGAAGCAGTGGACCTGATTGAACACATTGCCGTGGCTTTCTCAGTAGCTAAATATGGTTTTGTGAAACTGAAAAGACTGTAATTTACATGTatagttttgtattttatgtatctgtacatttttttctcagtattaTTACACTTTTAAGAGGTTGACTTTAAGTTTCTTAATTGAGATGTAAGTGATGTTGTTTCGTGTTTTTAAGGGGAGATTAAAtggagcaataaaataaaaccttgaTGAAACCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57364 lncRNA downstream 543701 18167020 ~ 18173182 (-) False G48476
TU57365 lncRNA downstream 543701 18170025 ~ 18173182 (-) True G48476
XR_004577851.1 lncRNA downstream 625270 18087504 ~ 18091613 (-) True LOC117596862
TU57290 lncRNA downstream 632078 18083657 ~ 18084805 (-) True G48419
TU57280 lncRNA downstream 669997 18037687 ~ 18046886 (-) True G48411
TU57866 lncRNA upstream 57291 18843753 ~ 18844635 (-) True G48938
TU57868 lncRNA upstream 67051 18853513 ~ 18853713 (-) True G48940
TU57878 lncRNA upstream 104101 18890563 ~ 18890812 (-) True G48947
TU57886 lncRNA upstream 141720 18928182 ~ 18929502 (-) True G48954
TU57908 lncRNA upstream 170695 18957157 ~ 18957459 (-) True G48970
XM_026941600.2 mRNA downstream 5608 18700916 ~ 18711275 (-) True vdac2
XM_026933173.2 mRNA downstream 103362 18380760 ~ 18613521 (-) False lrmda
XM_034303058.1 mRNA downstream 558699 18130354 ~ 18158184 (-) False zgc:110045
XM_034303059.1 mRNA downstream 558699 18130877 ~ 18158184 (-) False zgc:110045
XM_026941473.2 mRNA downstream 577953 18128349 ~ 18138930 (-) False zgc:110045
XM_034303116.1 mRNA upstream 2239 18788701 ~ 18807597 (-) False zfand4
XM_034303109.1 mRNA upstream 2239 18788701 ~ 18807597 (-) False zfand4
XM_034303114.1 mRNA upstream 2239 18788701 ~ 18807587 (-) False zfand4
XM_034303112.1 mRNA upstream 2239 18788701 ~ 18807527 (-) False zfand4
XM_034303110.1 mRNA upstream 2239 18788701 ~ 18807515 (-) False zfand4
TU57664 other downstream 103482 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 1055499 17657581 ~ 17661384 (-) False col13a1
XR_004577786.1 other downstream 1142461 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other downstream 1142461 17562332 ~ 17574422 (-) False LOC113538666
TU56907 other downstream 1240822 17471187 ~ 17476061 (-) True cisd1
TU58169 other upstream 530025 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 849376 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 1571472 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 1571526 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 1571526 20357988 ~ 20369429 (-) False gng2

Expression Profile