RNA id: XM_026933670.2


Basic Information

Item Value
RNA id XM_026933670.2
length 2349
RNA type mRNA
GC content 0.48
exon number 2
gene id foxi2
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19841727 ~ 19844357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTGGAAGTGGTGAAGCTGCCAGTAAAAAAGCTCCATGGCGCACGGCGCCTTTATAAATGCCTACAAATCCACTGCAGTTAATCCAAACCACTTGTTGCTGTCGGGTGCCGCGTGTGTACGAAGGAAAGCGGTGAGAGTAGCGCGCGCCtggtgtgagacagagagtgtgcgTCCGCTGGGGGATTTATCCAGTGCTGTGACAGGACATGATGAACTCCGTGGACGCGCAGATCCACCACAGTTCTGCCCCCGCCGCGAGTCCTCTCCAGCCCAAGAGCGCGCACGACGCGCCAGAGATGGCCGTGTACTGCGACAACTTCGTTTACCACCAGCAGAGTGTAGCGAGCGCGCAAAGGCCAGCCGGTTACGGCCTCGGCGAGTACGCGGCTACCCCAAACCCTTACCTATGGCTCAACGGTCCCGGAGTGAATTCCTCCCCATCATACTTACACGGAAACAGCAGCCCGTCGTTTATCGCTCCGTCCTACGGCTCTCAGAGGCAGTATCTCACCAACTCGCCCGGGTTCGCGGGTCCCGACCTCGGCTGGCTCTCCATCGCAAGTCAGGAGGAGCTGCTGAAGCTGGTGCGCCCTCCCTACTCCTACTCTGCCCTCATCGCCATGGCCATCCAAAACGCGCACGAGAAAAAGCTCACGCTCAGCCAGATCTACCAGTACGTAGCGGACAATTTCCCGTTTTATAAGAAGAGCAAGGCGGGCTGGCAGAACTCCATCAGACACAACCTCTCCCTGAACGACTGCTTCAAGAAAGTTCCGCGCGACGAGGATGATCCAGGAAAAGGAAACTATTGGACTTTGGACCCCAACTGCGAAAAAATGTTTGACAACGGAAACTTCCGGCGAAAAAGAAAGCGCAGGTCGGAAGCGGGCTCCGGGCTTTCCAGCGGTACTAAAGCCGAGGACGGTCGACCTGTTGCAGGTGTGAAGTCGTCTGAGAGCGCGCACCTGGGCGGGGCCGTGTCTCCGGAAATAGACACAGCAGCCAATGAGAGCCACAGAAGTGCGTCTCCAACGGCTCCTGCGTCAGCGCCTTGCTTCAACAGCTTCTTCAGCACCATGTCCGGAATGAGCTCGGCCCCGGGGCCGGCCGTTAGACAGGGCTCCCTGGGGCTAATCAGCGAGCTGTCCAGTCGGAACATTAGTGCTCTAAGCCCGTATCACGGCGCCTCTGCGACCGACGCTGCGCCACCCGGGGAGCAAAATGACCACACCGTGCACGCGAACCGAGCCACGTACTCGAGCGCGTTCGGTGGCGCTCAAAGTGCGCAGTACAACGGCCACTTCTACAACAGCTTCAGCGTGAACAGTCTCATATACCCGAGAGAGGGCACGGAGTTATAATTACGGAACGTCCTTAGTGTGGCAGCTCTGAAtctgtctgggtttttttttaaggcattttcacattttagcCTTGAAATtaaagtacattaaaaaaaaacctgcattgCAAAAATATCCAGTACTGAATTAAGCTTTACTGTGCTTACTGTGTCCACTGGGACTTGTATAAACACCATAGGCCTAAGAGTTATTTCAGTAGGCCTATAGTAGGTATTAAATTAACCCTTCAAAAAATTCAACACTGGAGGTGGTAATTTAACAGGACATGGTGACATTGGGGATTTCACTGTGTAGCAGGGTGTAAGCCTAGCTCAGCTTGTGCAACAGACGAATATTTGTAAATGGCATTAACTCAGtgaaagtatgtattcatataCATCTCCTTCGAGATTATTAGTccaaacatattttttgttgttcataTTCTAGTTTAGATAACATACACGTTTGATACACCCTTTATTATGCAGCAATACTAATTCATTTAATGCACTAATGGTGAGTTGTATTTCTGAGGAAACTCGGGAGATACagccttttttaaaacaattttaaatccAACACTGTAACTGGTGGTAAATGCAAATGTATCCACCTTAAATATTAGTGCTTCCAGCTGTACCAgcctttttctttatctttatctctgtctctctttaccactgtgttttaatgtgtattttttgtaaattatatagttattttaaaatatatatttatattaaattatgtatttttgtagacTGTTTCAGAGGACAAagatgtattttgtatttggaTAATAAGTTATGAAGACAAAAGCATTTCTGCATAAGTGCCAGCTAATCTTCAGGCTCATTTGGAATGTTTGTCCACACTTTAACCTCAAATAACTGGACATTTTCCCTGTTTTTaagaacatgcaaacatttcccctgtttttaagaaaattacAATTTGATAATATCTTTTTGGATCCTTAAATCTCttgtataatattatta

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0009888 tissue development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09401 FOXI; forkhead box protein I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58494 lncRNA downstream 90373 19747694 ~ 19751354 (-) False slc4a11
TU58495 lncRNA downstream 126307 19714165 ~ 19715420 (-) True G49484
TU58497 lncRNA downstream 126307 19714418 ~ 19715420 (-) False G49484
TU58488 lncRNA downstream 152850 19688592 ~ 19688877 (-) True G49481
TU58214 lncRNA downstream 413002 19427746 ~ 19428725 (-) True G49232
TU58636 lncRNA upstream 51341 19895698 ~ 19970294 (-) False G49584
TU58643 lncRNA upstream 114087 19958444 ~ 19964311 (-) True G49584
TU58693 lncRNA upstream 176330 20020687 ~ 20025664 (-) True G49606
TU58688 lncRNA upstream 219899 20064256 ~ 20064511 (-) True G49605
TU58757 lncRNA upstream 336721 20181078 ~ 20184289 (-) True G49661
XM_026943999.2 mRNA downstream 27861 19810135 ~ 19813866 (-) True cfd
XM_026939218.2 mRNA downstream 34104 19787744 ~ 19807623 (-) True c3h20orf194
XM_026943544.2 mRNA downstream 90392 19716600 ~ 19751335 (-) False slc4a11
XM_026936642.2 mRNA upstream 152512 19996869 ~ 20032845 (-) False letm1
XM_026936636.2 mRNA upstream 152512 19996869 ~ 20032845 (-) True letm1
XM_026937620.2 mRNA upstream 222345 20066702 ~ 20110665 (-) True kiaa1109
XM_026942983.2 mRNA upstream 267353 20111710 ~ 20120717 (-) True c9orf72
XM_026932676.2 mRNA upstream 283390 20127747 ~ 20150575 (-) False lingo2b
XR_004577815.1 other downstream 174066 19635838 ~ 19667661 (-) False atrn
TU58169 other downstream 521994 19316487 ~ 19319733 (-) True G49195
TU57664 other downstream 1228326 18330368 ~ 18613401 (-) True lrmda
TU56951 other downstream 2180343 17657581 ~ 17661384 (-) False col13a1
XR_004577787.1 other downstream 2267305 17562332 ~ 17574422 (-) False LOC113538666
TU58944 other upstream 513577 20357934 ~ 20369097 (-) False gng2
TU58943 other upstream 513631 20357988 ~ 20369097 (-) False gng2
TU58946 other upstream 513631 20357988 ~ 20369429 (-) False gng2
TU59887 other upstream 1767417 21611774 ~ 21614267 (-) False plekhh2
trnai-uau other upstream 2051827 21896184 ~ 21896277 (-) True trnai-uau

Expression Profile