Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026933724.2 |
| length | 1256 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 9 |
| gene id | cuedc2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 15673435 ~ 15677449 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU55393 | lncRNA | upstream | 199565 | 15473201 ~ 15473870 (+) | True | G46849 |
| TU55373 | lncRNA | upstream | 253793 | 15419029 ~ 15419642 (+) | True | G46833 |
| TU55286 | lncRNA | upstream | 589125 | 15079813 ~ 15084310 (+) | True | G46765 |
| TU55287 | lncRNA | upstream | 589125 | 15081653 ~ 15084310 (+) | False | G46765 |
| TU55220 | lncRNA | upstream | 658254 | 15014123 ~ 15015181 (+) | True | G46713 |
| TU55615 | lncRNA | downstream | 33688 | 15711137 ~ 15715524 (+) | True | G47043 |
| TU55651 | lncRNA | downstream | 216132 | 15893581 ~ 15896079 (+) | True | G47071 |
| TU55664 | lncRNA | downstream | 355855 | 16033304 ~ 16035339 (+) | True | G47084 |
| TU55821 | lncRNA | downstream | 426387 | 16103836 ~ 16104050 (+) | True | G47224 |
| TU55827 | lncRNA | downstream | 447217 | 16124666 ~ 16134002 (+) | True | cxcl12a |
| XM_026933760.2 | mRNA | upstream | 47589 | 15590118 ~ 15625846 (+) | False | pax2a |
| XM_026933736.2 | mRNA | upstream | 47589 | 15596662 ~ 15625846 (+) | True | pax2a |
| XM_026933786.2 | mRNA | upstream | 47589 | 15596662 ~ 15625846 (+) | False | pax2a |
| XM_026933832.2 | mRNA | upstream | 47589 | 15596662 ~ 15625846 (+) | False | pax2a |
| XM_026933768.2 | mRNA | upstream | 47589 | 15596662 ~ 15625846 (+) | False | pax2a |
| XM_026943305.2 | mRNA | downstream | 45432 | 15722881 ~ 15730701 (+) | True | dnajb12a |
| XM_026943827.2 | mRNA | downstream | 69004 | 15746453 ~ 15773703 (+) | True | spock2 |
| XM_026943836.2 | mRNA | downstream | 69004 | 15746453 ~ 15773703 (+) | False | spock2 |
| XM_026940901.2 | mRNA | downstream | 115957 | 15793406 ~ 15797191 (+) | True | eif4ebp2 |
| XM_026943092.2 | mRNA | downstream | 121779 | 15799228 ~ 15812480 (+) | False | pald1b |
| XR_004577898.1 | other | upstream | 1305989 | 14361367 ~ 14367446 (+) | False | cgas |
| XR_003404567.2 | other | upstream | 1390267 | 14213402 ~ 14283168 (+) | False | slc24a3 |
| TU54033 | other | upstream | 2172389 | 13498092 ~ 13501046 (+) | False | pcbd1 |
| TU53738 | other | upstream | 2640187 | 13032279 ~ 13033248 (+) | False | si:ch211-223p8.8 |
| XR_003404144.2 | other | upstream | 2673473 | 12982406 ~ 12999962 (+) | False | col17a1b |
| TU55629 | other | downstream | 115979 | 15793428 ~ 15797204 (+) | False | eif4ebp2 |
| XR_003404341.2 | other | downstream | 393265 | 16070714 ~ 16073067 (+) | True | cxcl18a.1 |
| TU55689 | other | downstream | 393310 | 16070759 ~ 16071920 (+) | False | cxcl18a.1 |
| TU55884 | other | downstream | 557086 | 16234535 ~ 16236648 (+) | False | lrrc18a |
| XR_003403773.2 | other | downstream | 3663901 | 19341350 ~ 19356098 (+) | True | sfxn5a |
