RNA id: XR_004577786.1


Basic Information

Item Value
RNA id XR_004577786.1
length 2677
RNA type misc_RNA
GC content 0.49
exon number 20
gene id LOC113538666
representative False

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17561404 ~ 17574422 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGCCAGGCGCTCAGAGAGCAGCGACAGCACAGCGCCGTCCATCTCCAGCTTCATGCCACAATGACACACATCCCGCGAATATTTCAACACAAAAGGAGTCAGAACAAGCGCACAAGGTCTATGTGAAAGCTGTTCCTTTGAAAGAGAATGTATCTATCTGGGTGGACAGAGGTCTCTAGCCACACAGCGAGCTGCTCTGCCATTTGAAGCTCTCTCTATGGTGCGAAGTGACTCTGTGGCCATGGGGAATGGTTCTATCAAAGCCCCTCGGCTGGAGGAGACATGCTTGGCCTCAGGTATTAAAGAGTCACCGGTGTGGGAGTCATCGGAGCAGCTGAGGCTGAGGATAGCCTGGCTCGAGGAGGAGCTTACCCGCCGAGACCATGAGCTAAGAGCCCAGGAGCTTCAGCTGCAGGCTCTACAGAGGGAGCTCGAGGCCAAAGTGTCTCAGATCGACAAGCTTCAGGATGCCATCGGCTACAACAGCCTGGGCCGCTCTCCACCAGCGAGGCACAGTCACAGGCTGCTCAGCGTCATTAATCAGGGCTCAACACGCTTCCACAGGGTGGCTGTAGAGGTTCACCGCCGACTCAAAGCCAAGGAAGGGGTTTCTGCTGAGCCTACATCTGGAAAATTCTACAGTGGCCACAGGGTCCATCATGTGTCTACAGAGAGAACACGTATCCGGAAAGACTCAGGCACCAAGAGACTGATCAATGAGGCCATCATGAACAACGACTTTCTGAAGAAGTTAGAGCCTCAACACACACGAGAGATGGTGGACTGCATGTATGAGAAAATCTTTGCTGCCAATCAGGTGGTGATCCAAGAAGGAGAGCCTGGGAACTACCTCTATGTGCTTGCAGAGGGCTTTTTGGAGGTGATGCAAAATGGGAAGCTCCTGGGGCAGATGCGGCCTGGAACAGCTTTTGGAGAATTGGCCATCCTCTACAACTGCAAGAGGACTGCCACTGTTAAAGCTGTGACTCAGTCCCACATCTGGGCCCTGGACCGGCAGATGTTTCAGAGCATCATGATGAGATCCACTCAGGCCAGACACGCAGAGTACTTCAGCTTCCTGCGCAGtgtGTCTTTATTGAAGGACTTGCCAGAGGAGAAACTTGCCAAAATTGTTGACTGTTTAGAAATTGATTATTTTGACAAAGGGGAGTACATTATTCGTGAGGGTGAGGAAGGGAACACTTTCTTCATTATAGCTAAAGGAGAGGTTTCAGTAACCCAGAGCACAGAGGGCTTTCCTGAACCACAGGAGATTAAGACCCTGGGAGTAGGAGATTACTTTGGAGAAAAAGCTCTCATAAGTGAGGATGTTCGTTCAGCTAATATCATTGCAAAGGAGAATGACACCCAGTGTTTGGTGGTGGACAGAGATAACTTTAATCAGATGGTGGGCACTTATGAGGAGCTGCAGGCATATCTGCGGGAGTATGTGGCGCAGCTGTCTATAAATGATGAGAGGAGAAATGCAGCAACCCAGTCTCCTCTGCGTGAGCGAGGCACAGAGGCAGCTGAGCTGCGCAATCTGCGGGAGAAAGCCATGCGACTGTCCAGTAGCTCTTTCTTACGTGAGCTGCAAATTGTGGCCACGCTAGGCATGGGAGGCTTTGGCAGAGTAGAGCTGGTGAAGCTCAAAGGTGAAGATACTGCTTTTGCTTTGAAGTGCATTAAGAAGAAGCATATTGTTGACACTAAGCAGCAGGACCACATCTACTCtgagaaaaacattttgcaaaTGACCAACTGCAACTTTATAGTCAGattGTTTCGTACATTTCGGGATAATAAATATGTGTACATGCTGCTTGAGGTCTGTCTTGGTGGAGAGTTATGGAGCATTCTCAGGGACATGGGTTTCTTTGAGGAGGCCACTGCACGATTCTGTATTGGTTGTGTACTGGAGGCCTTTGATTACCTGCATGGAATGGGTGTTGTTTACCGAGACCTGAAGCCAGAGAATCTACTTCTGGATACAGAGGGCTATATCAAAATGACTGATTTTGGCTTTGCAAAAAGAATTGGTTTGGGAAAGAAAACCTGGACATTCTGTGGAACTCCAGAATATGTGGCCCCTGAGGTCATCATGAATAAAGGCCATGATTTTGGAGCCGACTGCTGGTCCTTAGGGATCCTCATTTTTGAACTCCTCACTGGCAGCCCTCCTTTCTTAGGATCTGATCCTATTAAGATCTACACAATGGTGCTGCATGGCATAGAGAAGGTTGACTTTCCCAAGAGGATCAGCAAGCGCCCAGAGGACTTGATCAGGAGGCTTTGCAGGCTCAATCCTGCAGAACGACTCGGCAATAAGAAAAATGGCATCATTGACATCAAGAAACACAACACAATGGATAGTAGATGGAAGCCTTCTCCAAATTAGCCCCTCTCTGGCAGAATTGTCAAAAGCAGACCAAGAGCACATTCACAGAGGGAACAATTAGAGACCAGAATGAGACACACAGCTGTTGCCATCTTCAGCAGAACGGTGGAGCTACAGAGAGAAGGGTGATGCTGACGTACTTGGCTGATGCGTTAGCAACAATCATAGTGTTAGTGCCTGAAATACAGGTGGTTTCAGGGCTTCAACTGGGAGGGACTGAGACGACGGAAGCTGACATCTCCGCTGAAGAGAGAGCTAAAGGGGCCTCTGGATCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56927 lncRNA downstream 58472 17500633 ~ 17503860 (-) True G48158
XR_003404617.2 lncRNA downstream 142925 17371442 ~ 17419407 (-) True LOC113545496
XR_004577905.1 lncRNA downstream 432719 17116954 ~ 17129613 (-) True LOC117596916
TU56682 lncRNA downstream 471749 17090382 ~ 17090583 (-) True G47940
TU56621 lncRNA downstream 553283 17008840 ~ 17009049 (-) True G47882
TU57004 lncRNA upstream 74709 17649131 ~ 17662704 (-) True G48195
TU57070 lncRNA upstream 134499 17708921 ~ 17710376 (-) True G48248
TU57076 lncRNA upstream 141813 17716235 ~ 17727208 (-) True G48250
TU57083 lncRNA upstream 188372 17762794 ~ 17765665 (-) True G48254
XR_004577884.1 lncRNA upstream 225318 17799740 ~ 17801886 (-) True LOC117596895
XM_026932098.2 mRNA downstream 40318 17513181 ~ 17522014 (-) True hells
XM_026935656.2 mRNA downstream 70657 17488029 ~ 17491675 (-) True galm
XM_026935666.2 mRNA downstream 86240 17471247 ~ 17476092 (-) False cisd1
XM_026937770.2 mRNA downstream 96721 17462712 ~ 17465611 (-) True ipmka
XM_034303042.1 mRNA downstream 285674 17132132 ~ 17276658 (-) True pcdh15a
XM_034302673.1 mRNA upstream 3756 17578178 ~ 17661419 (-) False col13a1
XM_034302669.1 mRNA upstream 3756 17578178 ~ 17661419 (-) False col13a1
XM_034302664.1 mRNA upstream 3756 17578178 ~ 17661419 (-) False col13a1
XM_034302659.1 mRNA upstream 3756 17578178 ~ 17661419 (-) False col13a1
XM_034302672.1 mRNA upstream 3756 17578178 ~ 17661419 (-) False col13a1
TU56907 other downstream 86271 17471187 ~ 17476061 (-) True cisd1
XR_004577773.1 other downstream 579603 16979131 ~ 16982729 (-) False morn4
XR_004577771.1 other downstream 579603 16979131 ~ 16982729 (-) False morn4
XR_004577772.1 other downstream 579603 16979131 ~ 16982729 (-) False morn4
TU55523 other downstream 2145849 15413941 ~ 15416483 (-) False c3h10orf53
TU56951 other upstream 83159 17657581 ~ 17661384 (-) False col13a1
TU57664 other upstream 755946 18330368 ~ 18613401 (-) True lrmda
TU58169 other upstream 1742065 19316487 ~ 19319733 (-) True G49195
XR_004577815.1 other upstream 2061416 19635838 ~ 19667661 (-) False atrn
TU58944 other upstream 2783512 20357934 ~ 20369097 (-) False gng2

Expression Profile