RNA id: XM_026933946.2


Basic Information

Item Value
RNA id XM_026933946.2
length 1866
RNA type mRNA
GC content 0.42
exon number 5
gene id morn4
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 16979131 ~ 16982729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACTGTGCAGGCTGCGTTGCCAAGAGAGCAGTGCGCGAGAGGAGAAGCGCGCTAGAGGCTGCCGCAGAGCAGAGAGCTCAACACCGCTGTCTTTTTTCCCTCAGGAAACCGAtatattcacacattttcaaaGGAGTTTTAATGCTTTTGCGACAACAAGGACATTATACAGGGTGGTCGAGGTATGACACTGACCAGGGGCTCCTTCACTTACTCAACTGGAGAAGAGTACAGTGGTGAATGGAAGGAAGGAAGGAGACATGGTGTAGGGCAACTGAAGTTCTCTGACGGCACTTGTTACAAGGGTCACTTTGAGAATGGCCTGTTCCATGGCTCTGGGGTCTTAATGTTCCCTGATGGATCCAGGTATGAAGGTGAATTTGCCCAAGGAAAATTCCAAGGTGTTGGAGTTTTTAGCAGATTCGACGGGATGAAGTTTGAAGGAGAATTCAAAAATGGCCGTGTGGAAGGACATGGCTTACTGACATTTCCGGATGGTTCTCATGGCATTCCACGGAACGAGGGGCTCTTTTCTGACAACAAGCTGCTGAAACGGGAGAAGAGCCAGGCGGTGGTGCAGCGGGCCCGGAGCTCAGCCTGCACTGCACGCAGCCTCTCTTTATGATCAGCACACTAATGATCTGATAATCACAATGCTGCTGCTCTCAGATCAGCTTCCCAAACTCCACTCCTACTGCAGAGGCAAACATTGCGAGTGAAACTGATTCAGGATCTGCACATAGAGCTCTCTTTCATGTGGGCGTTGCAGCAGATCCTCAGGAATGGATAACAGGGtttcctttccctctctcactctttctcagtGCTGGTCTGCCTCTGATGCCTCTagcttaatatatatatttaaaaaaaaaactgggcaAGGTTATTATTGCTGCATTAATATGAACTATTTCATCTTAGATATGGAGAAACCAAAGTCACCATCAACAACATGGGGCTACCGAGTGTTCTGTATGAGgagtcagtgtgtaacagtgagTTTATTTGCCTTTGTGAGACTGTGATTGTGCaccttctttattatttatctatttatttaacatgtttgtttatttaaatgttatttcaaGCACTTTTTCATTTTGGTAGAAACAATCTgacttaaatataaattcacttaaatgtatattaaaatgtaatatctgGATTTGTATATACCTCATGAAAAATGACACTGTATATCCAGTATTGATGTTCGAGATAATCAGAAGCCTATACACGTGGTGGACGTATTTTGAGTACAAAGCCGATTATGTGCTTTTAATTGAAATCAGGCAGTCTGGACAATGAAGAGTCTAAGCAGGCGATCCTCCTGAATGTGTGTATTCTCACCAGTGTGTTTCATTTATCTTCATGCACTTTGTGTAGTATTTTCTTGATGTATGGACCGAAAGTTTTAGTCAGGCTCTACTGACTATAATTATTGTAACTGCACTGTAAAAGCATGTATctgatcatttttattcagaatGGTGTGGGGGGACCGAGAAGTTTGCCTCTTTTATCTTCACCATAATAGCCAGGAATGGTGTGTATCTTCTAAGAACTAACATAACCATGGGTGTGGCTGTAGTCCATTGATCCATATGTCAGTGGTGTATTCTGCTTATCACTCAGTTTTTATCACTCAGTAATAATTCTATTTTGATCCTCCAGGTAACAACTGCTGGATATTGAGAAAACAGATTCAAAAGCTGGCTGTCGGCAGGGGAAGGAACAAAAACtagatttttaaaacagaaagggGCTACACTACACCTACTACTTCTTAGCACTGACAAGGAATGAGACTGATACAATAGATGCCTAAATATTGATgacaaactatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56451 lncRNA downstream 190402 16788519 ~ 16788729 (-) True G47735
TU56444 lncRNA downstream 211621 16765709 ~ 16767510 (-) True G47731
TU56286 lncRNA downstream 287532 16676050 ~ 16691599 (-) True G47599
TU56130 lncRNA downstream 532827 16444696 ~ 16446304 (-) False zdhhc16a
TU55985 lncRNA downstream 706600 16271270 ~ 16272531 (-) True G47359
TU56621 lncRNA upstream 26111 17008840 ~ 17009049 (-) True G47882
TU56682 lncRNA upstream 107653 17090382 ~ 17090583 (-) True G47940
XR_004577905.1 lncRNA upstream 134225 17116954 ~ 17129613 (-) True LOC117596916
XR_003404617.2 lncRNA upstream 388713 17371442 ~ 17419407 (-) True LOC113545496
TU56927 lncRNA upstream 517904 17500633 ~ 17503860 (-) True G48158
XM_026942679.2 mRNA downstream 6660 16968321 ~ 16972471 (-) False st3gal7
XM_026942688.2 mRNA downstream 6698 16968321 ~ 16972433 (-) True st3gal7
XM_026944408.2 mRNA downstream 86388 16877460 ~ 16892743 (-) False LOC113545189
XM_034303173.1 mRNA downstream 86396 16875201 ~ 16892735 (-) False LOC113545189
XM_034303043.1 mRNA upstream 149403 17132132 ~ 17276658 (-) False pcdh15a
XM_034303042.1 mRNA upstream 149403 17132132 ~ 17276658 (-) True pcdh15a
XM_034303046.1 mRNA upstream 179341 17162070 ~ 17276658 (-) False pcdh15a
XM_034303044.1 mRNA upstream 179581 17162310 ~ 17276658 (-) False pcdh15a
XM_034303045.1 mRNA upstream 179581 17162310 ~ 17276658 (-) False pcdh15a
TU55523 other downstream 1562648 15413941 ~ 15416483 (-) False c3h10orf53
TU55100 other downstream 2194397 14779865 ~ 14784734 (-) False sdhaf4
XR_004577668.1 other downstream 2786888 14181891 ~ 14192243 (-) True ccdc85a
XR_004577863.1 other downstream 3947935 13005486 ~ 13031196 (-) False slka
trnal-cag other downstream 4244849 12734200 ~ 12734282 (-) True trnal-cag
TU56907 other upstream 488458 17471187 ~ 17476061 (-) True cisd1
XR_004577786.1 other upstream 579603 17562332 ~ 17574422 (-) False LOC113538666
XR_004577787.1 other upstream 579603 17562332 ~ 17574422 (-) False LOC113538666
TU56951 other upstream 674852 17657581 ~ 17661384 (-) False col13a1
TU57664 other upstream 1347639 18330368 ~ 18613401 (-) True lrmda

Expression Profile