RNA id: XM_026933968.2


Basic Information

Item Value
RNA id XM_026933968.2
length 737
RNA type mRNA
GC content 0.47
exon number 5
gene id spcs3
representative True

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 3288730 ~ 3293879 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGTCTGAAGACGGGTATGGAAAGAAAACTAATAACACGTCGGAAAACCCACAAGACTTCCTGTAGCCCGCGTAGCTGAAACCGTAGCTTCTTAAACGAGTTATTATTAGTTTCTTTTGAAGGAGGTTTAGGTATGAATACGGTTTTATCGAGGGCGAACTCGCTGTTCGCCTTTTCTCTGAGTGTAATGGCGGCTCTGACTTTCGGCTGCTTCATCACCACAGCGTTCAGAGACAGAAGCGTTCCGGTGAATATCCACGTCTCCAGAGTGCTCCTAAAAAATGTGGACGACTTCACAGGACCAAGAGAAAGGAGTGATTTGGGTTtcgtgacctttgacctttctgTTGATCTAAAGCCGATATTCGACTGGAACGTAAAGGAGCTCTTCCTCTATCTGTCTGCTGAATATTCAACCAAAAGCAATGCATTGAACCAGGTGGTCCTATGGGACAAGATCGTTCTGAGAGGAGAAAACACCAAACTTGACCTGAAGGATATGAAGTCCGATTACTACTTCTTTGATGATGGAAATGGCCTGAGgGCGAATAAGAACGTGACTCTGACTCTCTCCTGGAACGTGGTGCCGAACGCTGGGATCTTGCCGTTGGTCATGGGCTCGGGTCACATCTCAGTGCCGTTCCCCGAGTCGTACGAAAGCACCAGAAGCTACTGAACCGTCCTGAGCCATCTTCATCACCGCTGTGCACTGCTGtgggttttaattaaaaaaaa

Function

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K12948 SPCS3, SPC3; signal peptidase complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47108 lncRNA downstream 304527 2633702 ~ 2984203 (-) False tenm3
TU47237 lncRNA downstream 561256 2725305 ~ 2727474 (-) True G39854
TU47156 lncRNA downstream 810306 2477692 ~ 2478424 (-) True G39774
TU47081 lncRNA downstream 1148881 2137447 ~ 2139849 (-) True G39707
TU47079 lncRNA downstream 1162083 2123975 ~ 2126647 (-) True G39705
TU47681 lncRNA upstream 199786 3493665 ~ 3583108 (-) False G40250
TU47679 lncRNA upstream 208952 3502831 ~ 3507506 (-) True G40250
TU47710 lncRNA upstream 345885 3639764 ~ 3640380 (-) True G40278
TU47755 lncRNA upstream 374968 3668847 ~ 3672053 (-) True G40315
TU47756 lncRNA upstream 379271 3673150 ~ 3673811 (-) True G40316
XM_034302849.1 mRNA downstream 304651 2220147 ~ 2984079 (-) True tenm3
XM_034302850.1 mRNA downstream 674789 2220147 ~ 2613941 (-) False tenm3
XM_034302851.1 mRNA downstream 706349 2220147 ~ 2582381 (-) False tenm3
XM_034302853.1 mRNA downstream 762917 2220147 ~ 2525813 (-) False tenm3
XM_034302852.1 mRNA downstream 767232 2220147 ~ 2521498 (-) False tenm3
XM_026938890.2 mRNA upstream 38089 3331968 ~ 3433129 (-) False wdr17
XM_034302841.1 mRNA upstream 38089 3331968 ~ 3433129 (-) True wdr17
XM_026931999.2 mRNA upstream 389564 3683443 ~ 3699520 (-) False cep44
XM_026931975.2 mRNA upstream 389564 3683443 ~ 3699520 (-) False cep44
XM_026932008.2 mRNA upstream 389564 3683443 ~ 3699520 (-) True cep44
trnah-gug_3 other downstream 254177 3034482 ~ 3034553 (-) True trnah-gug_3
trnah-gug_2 other downstream 254793 3033866 ~ 3033937 (-) True trnah-gug_2
trnae-uuc other downstream 255927 3032732 ~ 3032803 (-) True trnae-uuc
TU47094 other downstream 1114979 2173358 ~ 2173751 (-) True G39720
TU46993 other downstream 1309199 1977326 ~ 1979531 (-) False lgi2b
XR_004577883.1 other upstream 1251705 4545584 ~ 4609450 (-) False dclk2a
TU48529 other upstream 1909827 5203706 ~ 5227923 (-) False lsm6
TU48528 other upstream 1931151 5225030 ~ 5227923 (-) False lsm6
XR_004577821.1 other upstream 2462832 5756711 ~ 5819513 (-) False gab1
XR_004577908.1 other upstream 3867595 7161474 ~ 7204151 (-) False lef1

Expression Profile